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protr  

Generating Various Numerical Representation Schemes for Protein Sequences
View on CRAN: Click here


Download and install protr package within the R console
Install from CRAN:
install.packages("protr")

Install from Github:
library("remotes")
install_github("cran/protr")

Install by package version:
library("remotes")
install_version("protr", "1.7-5")



Attach the package and use:
library("protr")
Maintained by
Nan Xiao
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2012-11-18
Latest Update: 2024-09-11
Description:
Comprehensive toolkit for generating various numerical features of protein sequences described in Xiao et al. (2015) . For full functionality, the software 'ncbi-blast+' is needed, see for more information.
How to cite:
Nan Xiao (2012). protr: Generating Various Numerical Representation Schemes for Protein Sequences. R package version 1.7-5, https://cran.r-project.org/web/packages/protr. Accessed 28 Jun. 2026.
Previous versions and publish date:
0.1-0 (2012-11-18 22:03), 0.2-0 (2013-12-19 09:31), 0.2-1 (2014-01-25 14:33), 0.3-1 (2014-08-24 00:30), 0.4-1 (2014-10-10 10:59), 0.5-1 (2014-12-24 01:23), 1.0-1 (2015-11-27 11:41), 1.1-1 (2015-12-29 21:34), 1.2-0 (2016-11-12 19:55), 1.2-1 (2016-12-30 10:12), 1.3-0 (2017-05-08 14:00), 1.4-0 (2017-06-06 18:49), 1.4-1 (2017-07-09 08:15), 1.4-2 (2017-09-29 05:15), 1.5-0 (2017-11-18 05:07), 1.5-1 (2018-07-13 06:30), 1.5-2 (2018-11-22 06:20), 1.6-0 (2019-02-11 08:10), 1.6-1 (2019-02-24 20:30), 1.6-2 (2019-05-18 09:00), 1.6-3 (2023-03-05 07:00), 1.7-0 (2023-10-30 08:00), 1.7-1 (2024-04-20 05:42), 1.7-2 (2024-07-21 20:20), 1.7-3 (2024-08-30 22:20), 1.7-4 (2024-09-12 01:00)
Other packages that cited protr R package
View protr citation profile
Other R packages that protr depends, imports, suggests or enhances
Complete documentation for protr
Functions, R codes and Examples using the protr R package
Some associated functions: AA2DACOR . AA3DMoRSE . AAACF . AABLOSUM100 . AABLOSUM45 . AABLOSUM50 . AABLOSUM62 . AABLOSUM80 . AABurden . AACPSA . AAConn . AAConst . AADescAll . AAEdgeAdj . AAEigIdx . AAFGC . AAGETAWAY . AAGeom . AAInfo . AAMOE2D . AAMOE3D . AAMetaInfo . AAMolProp . AAPAM120 . AAPAM250 . AAPAM30 . AAPAM40 . AAPAM70 . AARDF . AARandic . AATopo . AATopoChg . AAWHIM . AAWalk . AAindex . OptAA3d . acc . crossSetSim . extractAAC . extractAPAAC . extractBLOSUM . extractCTDC . extractCTDCClass . extractCTDD . extractCTDDClass . extractCTDT . extractCTDTClass . extractCTriad . extractCTriadClass . extractDC . extractDescScales . extractFAScales . extractGeary . extractMDSScales . extractMoran . extractMoreauBroto . extractPAAC . extractPSSM . extractPSSMAcc . extractPSSMFeature . extractProtFP . extractProtFPGap . extractQSO . extractSOCN . extractScales . extractScalesGap . extractTC . getUniProt . parGOSim . parSeqSim . parSeqSimDisk . protcheck . protr-package . protseg . readFASTA . readPDB . removeGaps . twoGOSim . twoSeqSim . 
Some associated R codes: desc-01-AAC.R . desc-02-DC.R . desc-03-TC.R . desc-04-MoreauBroto.R . desc-05-Moran.R . desc-06-Geary.R . desc-07-CTDC.R . desc-07-CTDCClass.R . desc-08-CTDT.R . desc-08-CTDTClass.R . desc-09-CTDD.R . desc-09-CTDDClass.R . desc-10-CTriad.R . desc-10-CTriadClass.R . desc-11-SOCN.R . desc-12-QSO.R . desc-13-PAAC.R . desc-14-APAAC.R . desc-15-PSSM.R . desc-15-PSSMAcc.R . desc-15-PSSMFeature.R . misc-01-readFASTA.R . misc-02-readPDB.R . misc-03-protcheck.R . misc-04-protseg.R . misc-05-getUniProt.R . misc-06-acc.R . misc-07-removeGaps.R . par-01-parSeqSim.R . par-02-parGOSim.R . pcm-01-extractScales.R . pcm-01-extractScalesGap.R . pcm-02-extractDescScales.R . pcm-03-extractProtFP.R . pcm-03-extractProtFPGap.R . pcm-04-extractFAScales.R . pcm-05-extractMDSScales.R . pcm-06-extractBLOSUM.R . protr-datalist.R . protr-package.R .  Full protr package functions and examples
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