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protag
View on CRAN: Click
here
Download and install protag package within the R console
Install from CRAN:
install.packages("protag")
Install from Github:
library("remotes")
install_github("cran/protag")
Install by package version:
library("remotes")
install_version("protag", "1.0.0")
Attach the package and use:
library("protag")
Maintained by
Bo Yuan
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[Scholar Profile | Author Map]
All associated links for this package
First Published: 2019-08-09
Latest Update: 2019-08-09
Description:
In a typical protein labelling procedure, proteins are chemically tagged with a functional group, usually at specific sites, then digested into peptides, which are then analyzed using matrix-assisted laser desorption ionization - time of flight mass spectrometry (MALDI-TOF MS) to generate peptide fingerprint. Relative to the control, peptides that are heavier by the mass of the labelling group are informative for sequence determination. Searching for peptides with such mass shifts, however, can be difficult. This package, designed to tackle this inconvenience, takes as input the mass list of two or multiple MALDI-TOF MS mass lists, and makes pairwise comparisons between the labeled groups vs. control, and restores centroid mass spectra with highlighted peaks of interest for easier visual examination. Particularly, peaks differentiated by the mass of the labelling group are defined as a
How to cite:
Bo Yuan (2019). protag: Search Tagged Peptides & Draw Highlighted Mass Spectra. R package version 1.0.0, https://cran.r-project.org/web/packages/protag. Accessed 30 Jan. 2025.
Previous versions and publish date:
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Complete documentation for protag
Functions, R codes and Examples using
the protag R package
Some associated functions: myoglobin . protag . tag.search . tag.spectra.butterflyplot . tag.spectra.listplot .
Some associated R codes: exampleData.document.R . package.document.R . tag.search.R . tag.spectra.butterflyplot.R . tag.spectra.listplot.R . Full protag package functions and examples
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