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preseqR  

Predicting Species Accumulation Curves
View on CRAN: Click here


Download and install preseqR package within the R console
Install from CRAN:
install.packages("preseqR")

Install from Github:
library("remotes")
install_github("cran/preseqR")

Install by package version:
library("remotes")
install_version("preseqR", "4.0.0")



Attach the package and use:
library("preseqR")
Maintained by
Chao Deng
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2014-09-05
Latest Update: 2018-06-27
Description:
Originally as an R version of Preseq , the package has extended its functionality to predict the r-species accumulation curve (r-SAC), which is the number of species represented at least r times as a function of the sampling effort. When r = 1, the curve is known as the species accumulation curve, or the library complexity curve in high-throughput genomic sequencing. The package includes both parametric and nonparametric methods, as described by Deng C, et al. (2018) .
How to cite:
Chao Deng (2014). preseqR: Predicting Species Accumulation Curves. R package version 4.0.0, https://cran.r-project.org/web/packages/preseqR
Previous versions and publish date:
1.0.1 (2014-09-05 01:08), 1.0 (2014-08-24 00:41), 1.1.1 (2015-04-01 23:53), 1.1 (2015-03-11 23:17), 1.2.1 (2015-06-04 20:58), 2.0.0 (2016-02-03 01:18), 2.0.1.1 (2016-07-12 10:37), 2.0.1 (2016-07-12 07:49), 3.0.0 (2016-12-07 08:43), 3.0.1 (2017-04-19 06:26), 3.1.0 (2017-05-22 01:25), 3.1.1 (2017-07-27 12:42), 3.1.2 (2017-08-15 08:54)
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