Other packages > Find by keyword >

preseqR  

Predicting Species Accumulation Curves
View on CRAN: Click here


Download and install preseqR package within the R console
Install from CRAN:
install.packages("preseqR")

Install from Github:
library("remotes")
install_github("cran/preseqR")

Install by package version:
library("remotes")
install_version("preseqR", "4.0.0")



Attach the package and use:
library("preseqR")
Maintained by
Chao Deng
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2014-08-24
Latest Update: 2018-06-27
Description:
Originally as an R version of Preseq , the package has extended its functionality to predict the r-species accumulation curve (r-SAC), which is the number of species represented at least r times as a function of the sampling effort. When r = 1, the curve is known as the species accumulation curve, or the library complexity curve in high-throughput genomic sequencing. The package includes both parametric and nonparametric methods, as described by Deng C, et al. (2018) .
How to cite:
Chao Deng (2014). preseqR: Predicting Species Accumulation Curves. R package version 4.0.0, https://cran.r-project.org/web/packages/preseqR. Accessed 05 Jan. 2025.
Previous versions and publish date:
1.0.1 (2014-09-05 01:08), 1.0 (2014-08-24 00:41), 1.1.1 (2015-04-01 23:53), 1.1 (2015-03-11 23:17), 1.2.1 (2015-06-04 20:58), 2.0.0 (2016-02-03 01:18), 2.0.1.1 (2016-07-12 10:37), 2.0.1 (2016-07-12 07:49), 3.0.0 (2016-12-07 08:43), 3.0.1 (2017-04-19 06:26), 3.1.0 (2017-05-22 01:25), 3.1.1 (2017-07-27 12:42), 3.1.2 (2017-08-15 08:54)
Other packages that cited preseqR R package
View preseqR citation profile
Other R packages that preseqR depends, imports, suggests or enhances
Complete documentation for preseqR
Downloads during the last 30 days
Get rewarded with contribution points by helping add
Reviews / comments / questions /suggestions ↴↴↴

Today's Hot Picks in Authors and Packages

quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  
interplot  
Plot the Effects of Variables in Interaction Terms
Plots the conditional coefficients ("marginal effects") of variables included in multiplicative int ...
Download / Learn more Package Citations See dependency  
Maintainer: Yue Hu (view profile)
ENMeval  
Automated Tuning and Evaluations of Ecological Niche Models
Runs ecological niche models over all combinations of user-defined settings (i.e., tuning), performs ...
Download / Learn more Package Citations See dependency  
bama  
High Dimensional Bayesian Mediation Analysis
Perform mediation analysis in the presence of high-dimensional mediators based on the potential out ...
Download / Learn more Package Citations See dependency  
uclust  
Clustering and Classification Inference with U-Statistics
Clustering and classification inference for high dimension low sample size (HDLSS) data with U-stati ...
Download / Learn more Package Citations See dependency  
GFisher  
Generalized Fisher's Combination Tests Under Dependence
Accurate and computationally efficient p-value calculation methods for a general family of Fisher ty ...
Download / Learn more Package Citations See dependency  

23,440

R Packages

202,297

Dependencies

63,567

Author Associations

23,434

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA