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prepR4pcm  

Prepare Data and Trees for Phylogenetic Comparative Methods
View on CRAN: Click here


Download and install prepR4pcm package within the R console
Install from CRAN:
install.packages("prepR4pcm")

Install from Github:
library("remotes")
install_github("cran/prepR4pcm")

Install by package version:
library("remotes")
install_version("prepR4pcm", "1.0.0")



Attach the package and use:
library("prepR4pcm")
Maintained by
Shinichi Nakagawa
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2026-06-25
Latest Update: 2026-06-25
Description:
Reconcile species names across datasets and phylogenetic trees for comparative biology workflows. Identifies mismatches due to formatting differences, taxonomic synonymy, and spelling errors. Produces detailed reports documenting how each name was resolved, which taxonomic authority was used, and what remains unresolved. Supports exact matching, name normalisation, synonym resolution via local taxonomic databases, and fuzzy matching for likely typos. Detects taxonomic splits and lumps. For methodological context, see Nakagawa et al. (2026) <doi:10.32942/X2468Z>.
How to cite:
Shinichi Nakagawa (2026). prepR4pcm: Prepare Data and Trees for Phylogenetic Comparative Methods. R package version 1.0.0, https://cran.r-project.org/web/packages/prepR4pcm. Accessed 05 Aug. 2026.
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Complete documentation for prepR4pcm
Functions, R codes and Examples using the prepR4pcm R package
Full prepR4pcm package functions and examples
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