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predmicror  

Fitting Predictive Microbiology Models
View on CRAN: Click here


Download and install predmicror package within the R console
Install from CRAN:
install.packages("predmicror")

Install from Github:
library("remotes")
install_github("cran/predmicror")

Install by package version:
library("remotes")
install_version("predmicror", "1.3.2")



Attach the package and use:
library("predmicror")
Maintained by
Vasco Cadavez
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2026-06-19
Latest Update: 2026-06-19
Description:
Provides predictive microbiology model functions and convenience wrappers for fitting primary growth, microbial inactivation, dynamic, omnibus, and cardinal parameter models to experimental data using nonlinear least squares and related mixed-effects or time-varying workflows. Includes helper functions for extracting fitted values, calculating model diagnostics, and comparing fitted models. Implemented model families include those described by: Zwietering et al. (1990) <doi:10.1128/AEM.56.6.1875-1881.1990>, Baranyi and Roberts (1994) <doi:10.1016/0168-1605(94)90157-0>, Baranyi and Roberts (1995) <doi:10.1016/0168-1605(94)00121-L>, Buchanan et al. (1997) <doi:10.1006/fmic.1997.0125>, Richards (1959) <doi:10.1093/jxb/10.2.290>, Fang et al. (2012) <doi:10.1111/j.1750-3841.2012.02873.x>, Fang et al. (2013) <doi:10.1016/j.fm.2012.12.005>, Huang (2008) <doi:10.1111/j.1750-3841.2008.00785.x>, Huang (2009) <doi:10.1016/j.jfoodeng.2008.07.011>, Huang (2013) <doi:10.1016/j.foodcont.2012.11.019>, Geeraerd et al. (2005) <doi:10.1016/j.ijfoodmicro.2004.11.038>, van Boekel (2002) <doi:10.1016/S0168-1605(01)00742-5>, Peleg (1999) <doi:10.1016/S0963-9969(99)00081-2>, Mafart et al. (2002) <doi:10.1016/S0168-1605(01)00624-9>, Albert and Mafart (2005) <doi:10.1016/j.ijfoodmicro.2004.10.016>, Rosso et al. (1993) <doi:10.1006/jtbi.1993.1099>, Rosso et al. (1995) <doi:10.1128/AEM.61.2.610-616.1995>, and Rosso et al. (1996) <doi:10.4315/0362-028X-59.9.944>.
How to cite:
Vasco Cadavez (2026). predmicror: Fitting Predictive Microbiology Models. R package version 1.3.2, https://cran.r-project.org/web/packages/predmicror. Accessed 29 Oct. 2026.
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Complete documentation for predmicror
Functions, R codes and Examples using the predmicror R package
Full predmicror package functions and examples
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