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poppr  

Genetic Analysis of Populations with Mixed Reproduction
View on CRAN: Click here


Download and install poppr package within the R console
Install from CRAN:
install.packages("poppr")

Install from Github:
library("remotes")
install_github("cran/poppr")

Install by package version:
library("remotes")
install_version("poppr", "2.9.6")



Attach the package and use:
library("poppr")
Maintained by
Zhian N. Kamvar
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2013-04-26
Latest Update: 2024-01-15
Description:
Population genetic analyses for hierarchical analysis of partially clonal populations built upon the architecture of the 'adegenet' package. Originally described in Kamvar, Tabima, and Gr
How to cite:
Zhian N. Kamvar (2013). poppr: Genetic Analysis of Populations with Mixed Reproduction. R package version 2.9.6, https://cran.r-project.org/web/packages/poppr
Previous versions and publish date:
1.0.0 (2013-04-26 07:30), 1.0.1 (2013-07-03 01:06), 1.0.3 (2013-08-21 22:03), 1.0.4 (2013-12-04 19:26), 1.0.5 (2013-12-13 00:33), 1.0.6 (2014-03-05 18:11), 1.1.0 (2014-07-24 08:22), 1.1.1 (2014-07-27 08:43), 1.1.2 (2014-07-29 02:36), 1.1.3 (2015-02-03 20:11), 1.1.4 (2015-02-06 18:45), 1.1.5 (2015-05-13 00:53), 2.0.0 (2015-07-08 16:28), 2.0.1 (2015-07-14 21:44), 2.0.2 (2015-07-18 19:26), 2.1.0 (2015-12-01 08:01), 2.1.1 (2016-03-15 20:38), 2.2.0 (2016-06-13 17:18), 2.2.1 (2016-08-29 08:18), 2.3.0 (2016-11-23 17:45), 2.4.0 (2017-04-10 15:17), 2.4.1 (2017-04-14 20:11), 2.5.0 (2017-09-11 09:49), 2.6.0 (2018-01-08 23:57), 2.6.1 (2018-01-15 15:53), 2.7.0 (2018-03-16 18:09), 2.7.1 (2018-03-16 22:44), 2.8.0 (2018-05-19 09:20), 2.8.1 (2018-08-22 18:40), 2.8.2 (2019-03-11 11:30), 2.8.3 (2019-06-18 18:22), 2.8.4 (2020-02-12 16:50), 2.8.5 (2020-02-25 11:10), 2.8.6 (2020-06-02 10:50), 2.8.7 (2021-01-06 17:00), 2.9.0 (2021-02-06 23:30), 2.9.1 (2021-03-21 21:20), 2.9.2 (2021-05-22 22:30), 2.9.3 (2021-09-07 09:00), 2.9.4 (2023-03-23 04:20), 2.9.5 (2024-01-15 14:50)
Other packages that cited poppr R package
View poppr citation profile
Other R packages that poppr depends, imports, suggests or enhances
Functions, R codes and Examples using the poppr R package
Some associated functions: Aeut . MLG-accessors . MLG-class . MLG-method . Pinf . Pram . aboot . bitwise.dist . bitwise.ia . boot.ia . bootgen-class . bootgen-methods . bruvo.boot . bruvo.dist . bruvo.msn . bruvomat-class . bruvomat-methods . clonecorrect . coercion-methods . cutoff_predictor . diss.dist . diversity_boot . diversity_ci . diversity_stats . filter_stats . fix_replen . genclone-class . genclone-method . genetic_distance . genind2genalex . genotype_curve . getfile . grapes-greater-than-grapes . greycurve . ia . imsn . incomp . info_table . informloci . is.clone . levels-methods . locus_table . make_haplotypes-method . missingno . mlg.filter . mlg . mll-method . mll.custom . mll.reset-method . monpop . old2new_genclone . partial_clone . pgen . plot_filter_stats . plot_poppr_msn . poppr-package . poppr.all . poppr.amova . poppr.msn . poppr . poppr.plot . poppr_has_parallel . popsub . private_alleles . psex . rare_allele_correction . read.genalex . recode_polyploids . rraf . rrmlg . samp.ia . shufflepop . snpclone-coercion-methods . snpclone-method . test_replen . unique-methods . upgma . win.ia . 
Some associated R codes: aaaMLGclass.R . aaaMLGmethods.R . bootstraping.R . check_data.R . filter_stats.R . ia_jackknife.R . imsn.R . internal_methods.R . msn_handlers.R . pipe.R . poppr.R . round_robin.R . upgma.R .  Full poppr package functions and examples
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