Other packages > Find by keyword >

popkin  

Estimate Kinship and FST under Arbitrary Population Structure
View on CRAN: Click here


Download and install popkin package within the R console
Install from CRAN:
install.packages("popkin")

Install from Github:
library("remotes")
install_github("cran/popkin")

Install by package version:
library("remotes")
install_version("popkin", "1.3.23")



Attach the package and use:
library("popkin")
Maintained by
Alejandro Ochoa
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2018-01-15
Latest Update: 2023-01-07
Description:
Provides functions to estimate the kinship matrix of individuals from a large set of biallelic SNPs, and extract inbreeding coefficients and the generalized FST (Wright's fixation index). Method described in Ochoa and Storey (2021) .
How to cite:
Alejandro Ochoa (2018). popkin: Estimate Kinship and FST under Arbitrary Population Structure. R package version 1.3.23, https://cran.r-project.org/web/packages/popkin. Accessed 22 Dec. 2024.
Previous versions and publish date:
1.0.4 (2018-01-15 13:23), 1.0.5 (2018-01-26 18:36), 1.1.2 (2019-02-14 13:52), 1.2.2 (2019-05-13 19:10), 1.3.0 (2019-12-18 00:30), 1.3.7 (2021-02-09 20:30), 1.3.8 (2021-02-11 15:10), 1.3.13 (2021-07-27 23:00), 1.3.17 (2022-01-27 11:00)
Other packages that cited popkin R package
View popkin citation profile
Other R packages that popkin depends, imports, suggests or enhances
Complete documentation for popkin
Downloads during the last 30 days
Get rewarded with contribution points by helping add
Reviews / comments / questions /suggestions ↴↴↴

Today's Hot Picks in Authors and Packages

quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  
dmlalg  
Double Machine Learning Algorithms
Implementation of double machine learning (DML) algorithms in R, based on Emmenegger and Buehlmann ...
Download / Learn more Package Citations See dependency  
wordspace  
Distributional Semantic Models in R
An interactive laboratory for research on distributional semantic models ('DSM', see < ...
Download / Learn more Package Citations See dependency  
elect  
Estimation of Life Expectancies Using Multi-State Models
Functions to compute state-specific and marginal life expectancies. The computation is based on a fi ...
Download / Learn more Package Citations See dependency  
tropAlgebra  
Tropical Algebraic Functions
It includes functions like tropical addition, tropical multiplication for vectors and matrices. In t ...
Download / Learn more Package Citations See dependency  
LOGANTree  
Tree-Based Models for the Analysis of Log Files from Computer-Based Assessments
Enables researchers to model log-file data from computer-based assessments using machine-learning te ...
Download / Learn more Package Citations See dependency  
Maintainer: Qi Qin (view profile)

23,394

R Packages

201,798

Dependencies

63,416

Author Associations

23,395

Publication Badges

© Copyright 2022 - present. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA