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popkin  

Estimate Kinship and FST under Arbitrary Population Structure
View on CRAN: Click here


Download and install popkin package within the R console
Install from CRAN:
install.packages("popkin")

Install from Github:
library("remotes")
install_github("cran/popkin")

Install by package version:
library("remotes")
install_version("popkin", "1.3.23")



Attach the package and use:
library("popkin")
Maintained by
Alejandro Ochoa
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2018-01-15
Latest Update: 2023-01-07
Description:
Provides functions to estimate the kinship matrix of individuals from a large set of biallelic SNPs, and extract inbreeding coefficients and the generalized FST (Wright's fixation index). Method described in Ochoa and Storey (2021) .
How to cite:
Alejandro Ochoa (2018). popkin: Estimate Kinship and FST under Arbitrary Population Structure. R package version 1.3.23, https://cran.r-project.org/web/packages/popkin
Previous versions and publish date:
1.0.4 (2018-01-15 13:23), 1.0.5 (2018-01-26 18:36), 1.1.2 (2019-02-14 13:52), 1.2.2 (2019-05-13 19:10), 1.3.0 (2019-12-18 00:30), 1.3.7 (2021-02-09 20:30), 1.3.8 (2021-02-11 15:10), 1.3.13 (2021-07-27 23:00), 1.3.17 (2022-01-27 11:00)
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