Other packages > Find by keyword >

pooledpeaks  

Genetic Analysis of Pooled Samples
View on CRAN: Click here


Download and install pooledpeaks package within the R console
Install from CRAN:
install.packages("pooledpeaks")

Install from Github:
library("remotes")
install_github("cran/pooledpeaks")

Install by package version:
library("remotes")
install_version("pooledpeaks", "1.0.7")



Attach the package and use:
library("pooledpeaks")
Maintained by
Kathleen Kuesters
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2024-09-03
Latest Update: 2024-09-12
Description:
Analyzing genetic data obtained from pooled samples. This package can read in Fragment Analysis output files, process the data, and score peaks, as well as facilitate various analyses, including cluster analysis, calculation of genetic distances and diversity indices, as well as bootstrap resampling for statistical inference. Specifically tailored to handle genetic data efficiently, researchers can explore population structure, genetic differentiation, and genetic relatedness among samples. We updated some functions from Covarrubias-Pazaran et al. (2016) <doi:10.1186/s12863-016-0365-6> to allow for the use of new file formats and referenced the following to write our genetic analysis functions: Long et al. (2022) <doi:10.1038/s41598-022-04776-0>, Jost (2008) <doi:10.1111/j.1365-294x.2008.03887.x>, Nei (1973) <doi:10.1073/pnas.70.12.3321>, Foulley et al. (2006) <doi:10.1016/j.livprodsci.2005.10.021>, Chao et al. (2008) <doi:10.1111/j.1541-0420.2008.01010.x>.
How to cite:
Kathleen Kuesters (2024). pooledpeaks: Genetic Analysis of Pooled Samples. R package version 1.0.7, https://cran.r-project.org/web/packages/pooledpeaks. Accessed 06 Jan. 2025.
Previous versions and publish date:
1.0.5 (2024-09-03 17:50), 1.0.6 (2024-09-12 18:10)
Other packages that cited pooledpeaks R package
View pooledpeaks citation profile
Other R packages that pooledpeaks depends, imports, suggests or enhances
Complete documentation for pooledpeaks
Functions, R codes and Examples using the pooledpeaks R package
Full pooledpeaks package functions and examples
Downloads during the last 30 days
Get rewarded with contribution points by helping add
Reviews / comments / questions /suggestions ↴↴↴

Today's Hot Picks in Authors and Packages

quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  
TBFmultinomial  
TBF Methodology Extension for Multinomial Outcomes
Extends the test-based Bayes factor (TBF) methodology to multinomial regression models and discrete ...
Download / Learn more Package Citations See dependency  
lmds  
Landmark Multi-Dimensional Scaling
A fast dimensionality reduction method scaleable to large numbers of samples. Landmark Multi-Dime ...
Download / Learn more Package Citations See dependency  
mlr3fairness  
Fairness Auditing and Debiasing for 'mlr3'
Integrates fairness auditing and bias mitigation methods for the 'mlr3' ecosystem. This includes ...
Download / Learn more Package Citations See dependency  
RsqMed  
Total Mediation Effect Size Measure for High-Dimensional Mediators
An implementation of calculating the R-squared measure as a total mediation effect size measure and ...
Download / Learn more Package Citations See dependency  
NetSwan  
Network Strengths and Weaknesses Analysis
A set of functions for studying network robustness, resilience and vulnerability. ...
Download / Learn more Package Citations See dependency  

23,440

R Packages

202,297

Dependencies

63,567

Author Associations

23,434

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA