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pooledpeaks  

Genetic Analysis of Pooled Samples
View on CRAN: Click here


Download and install pooledpeaks package within the R console
Install from CRAN:
install.packages("pooledpeaks")

Install from Github:
library("remotes")
install_github("cran/pooledpeaks")

Install by package version:
library("remotes")
install_version("pooledpeaks", "1.0.6")



Attach the package and use:
library("pooledpeaks")
Maintained by
Kathleen Kuesters
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2024-09-03
Latest Update: 2024-09-12
Description:
Analyzing genetic data obtained from pooled samples. This package can read in Fragment Analysis output files, process the data, and score peaks, as well as facilitate various analyses, including cluster analysis, calculation of genetic distances and diversity indices, as well as bootstrap resampling for statistical inference. Specifically tailored to handle genetic data efficiently, researchers can explore population structure, genetic differentiation, and genetic relatedness among samples. We updated some functions from Covarrubias-Pazaran et al. (2016) <doi:10.1186/s12863-016-0365-6> to allow for the use of new file formats and referenced the following to write our genetic analysis functions: Long et al. (2022) <doi:10.1038/s41598-022-04776-0>, Jost (2008) <doi:10.1111/j.1365-294x.2008.03887.x>, Nei (1973) <doi:10.1073/pnas.70.12.3321>, Foulley et al. (2006) <doi:10.1016/j.livprodsci.2005.10.021>, Chao et al. (2008) <doi:10.1111/j.1541-0420.2008.01010.x>.
How to cite:
Kathleen Kuesters (2024). pooledpeaks: Genetic Analysis of Pooled Samples. R package version 1.0.6, https://cran.r-project.org/web/packages/pooledpeaks. Accessed 23 Nov. 2024.
Previous versions and publish date:
1.0.5 (2024-09-03 17:50), 1.0.6 (2024-09-12 18:10)
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