Other packages > Find by keyword >

pooledpeaks  

Genetic Analysis of Pooled Samples
View on CRAN: Click here


Download and install pooledpeaks package within the R console
Install from CRAN:
install.packages("pooledpeaks")

Install from Github:
library("remotes")
install_github("cran/pooledpeaks")

Install by package version:
library("remotes")
install_version("pooledpeaks", "1.1.0")



Attach the package and use:
library("pooledpeaks")
Maintained by
Kathleen Kuesters
[Scholar Profile | Author Map]
First Published: 2024-09-03
Latest Update: 2024-09-12
Description:
Analyzing genetic data obtained from pooled samples. This package can read in Fragment Analysis output files, process the data, and score peaks, as well as facilitate various analyses, including cluster analysis, calculation of genetic distances and diversity indices, as well as bootstrap resampling for statistical inference. Specifically tailored to handle genetic data efficiently, researchers can explore population structure, genetic differentiation, and genetic relatedness among samples. We updated some functions from Covarrubias-Pazaran et al. (2016) <doi:10.1186/s12863-016-0365-6> to allow for the use of new file formats and referenced the following to write our genetic analysis functions: Long et al. (2022) <doi:10.1038/s41598-022-04776-0>, Jost (2008) <doi:10.1111/j.1365-294x.2008.03887.x>, Nei (1973) <doi:10.1073/pnas.70.12.3321>, Foulley et al. (2006) <doi:10.1016/j.livprodsci.2005.10.021>, Chao et al. (2008) <doi:10.1111/j.1541-0420.2008.01010.x>.
How to cite:
Kathleen Kuesters (2024). pooledpeaks: Genetic Analysis of Pooled Samples. R package version 1.1.0, https://cran.r-project.org/web/packages/pooledpeaks. Accessed 06 Apr. 2025.
Previous versions and publish date:
1.0.5 (2024-09-03 17:50), 1.0.6 (2024-09-12 18:10), 1.0.7 (2024-11-20 00:20), 1.1.0 (2025-02-01 22:50)
Other packages that cited pooledpeaks R package
View pooledpeaks citation profile
Other R packages that pooledpeaks depends, imports, suggests or enhances
Complete documentation for pooledpeaks
Functions, R codes and Examples using the pooledpeaks R package
Full pooledpeaks package functions and examples
Downloads during the last 30 days
03/0703/0803/0903/1003/1103/1203/1303/1403/1503/1603/1703/1803/1903/2003/2103/2203/2303/2403/2503/2603/2703/2803/2903/3003/3104/0104/0204/0304/04Downloads for pooledpeaks05101520253035404550TrendBars

Today's Hot Picks in Authors and Packages

listarrays  
A Toolbox for Working with R Arrays in a Functional Programming Style
A toolbox for R arrays. Flexibly split, bind, reshape, modify, subset and name arrays. ...
Download / Learn more Package Citations See dependency  
FuzzyQ  
Fuzzy Quantification of Common and Rare Species
Fuzzy clustering of species in an ecological community as common or rare based on their abundance a ...
Download / Learn more Package Citations See dependency  
ider  
Various Methods for Estimating Intrinsic Dimension
An implementation of various methods for estimating intrinsic dimension of vector-valued dataset or ...
Download / Learn more Package Citations See dependency  
spCP  
Spatially Varying Change Points
Implements a spatially varying change point model with unique intercepts, slopes, variance intercep ...
Download / Learn more Package Citations See dependency  
r2resize  
In-Text Resize for Images, Tables and Fancy Resize Containers in 'shiny', 'rmarkdown' and 'quarto' Documents
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency  
danstat  
R Client for the Statistics Denmark Databank API
The purpose of the package is to enable an R function interface into the Statistics Denmark Databank ...
Download / Learn more Package Citations See dependency  

23,990

R Packages

207,311

Dependencies

64,809

Author Associations

23,991

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA