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pomp

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Statistical Inference for Partially Observed Markov Processes

View on CRAN: Click here

Download and install pomp package within the R console
Install from CRAN:

 install.packages("pomp")

Install from Github:

 library("remotes")

                        install_github("cran/pomp")

Install by package version:

 library("remotes")

                        install_version("pomp", "5.11")

Attach the package and use:

 library("pomp")

Maintained by
Aaron A. King
[Scholar Profile | Author Map]

All associated links for this package

First Published: 2007-07-22

Latest Update: 2023-08-07

Description:

Tools for data analysis with partially observed Markov process (POMP) models (also known as stochastic dynamical systems, hidden Markov models, and nonlinear, non-Gaussian, state-space models). The package provides facilities for implementing POMP models, simulating them, and fitting them to time series data by a variety of frequentist and Bayesian methods. It is also a versatile platform for implementation of inference methods for general POMP models.

How to cite:

Aaron A. King (2007). pomp: Statistical Inference for Partially Observed Markov Processes. R package version 5.11, https://cran.r-project.org/web/packages/pomp. Accessed 22 Dec. 2024.

Previous versions and publish date:

0.17-2 (2007-07-22 21:36), 0.17-3 (2007-07-24 07:36), 0.18-1 (2008-05-02 22:49), 0.18-2 (2008-05-05 20:20), 0.18-3 (2008-05-14 18:44), 0.19-1 (2008-05-19 09:25), 0.20-2 (2008-07-16 20:42), 0.20-4 (2008-07-21 08:20), 0.20-8 (2008-08-01 16:00), 0.21-3 (2008-08-17 10:31), 0.22-4 (2009-02-03 21:03), 0.22-5 (2009-02-04 19:47), 0.22-6 (2009-03-13 09:31), 0.23-1 (2009-04-16 10:21), 0.23-2 (2009-04-19 20:08), 0.23-5 (2009-05-04 12:20), 0.23-6 (2009-05-10 20:55), 0.24-1 (2009-05-15 16:45), 0.24-5 (2009-06-07 15:08), 0.24-7 (2009-06-22 21:00), 0.25-4 (2009-09-22 18:48), 0.25-7 (2009-11-15 14:51), 0.26-3 (2009-12-29 18:47), 0.27-1 (2010-01-21 08:14), 0.27-2 (2010-02-02 15:11), 0.28-2 (2010-03-23 08:27), 0.28-5 (2010-05-07 10:57), 0.29-2 (2010-05-25 19:09), 0.29-5 (2010-06-15 19:04), 0.30-1 (2010-06-29 18:43), 0.31-1 (2010-07-08 20:31), 0.32-1 (2010-08-24 13:00), 0.32-5 (2010-08-31 18:04), 0.32-6 (2010-09-22 16:59), 0.33-1 (2010-09-27 19:15), 0.34-1 (2010-10-10 19:30), 0.34-2 (2010-10-14 15:47), 0.35-1 (2010-10-26 14:10), 0.36-1 (2010-11-29 16:29), 0.36-2 (2011-04-13 16:24), 0.36-4 (2011-04-24 08:57), 0.36-5 (2011-04-28 10:30), 0.36-7 (2011-05-09 17:30), 0.37-1 (2011-05-15 19:37), 0.38-1 (2011-05-24 21:11), 0.38-2 (2011-06-04 09:25), 0.38-3 (2011-06-09 08:04), 0.38-5 (2011-07-24 07:16), 0.39-1 (2011-08-17 22:27), 0.39-2 (2011-09-01 15:07), 0.39-3 (2011-09-07 08:39), 0.39-4 (2011-11-13 10:12), 0.40-1 (2012-01-10 14:37), 0.40-2 (2012-01-12 09:24), 0.41-1 (2012-04-02 08:49), 0.41-3 (2012-04-11 08:03), 0.42-1 (2012-05-03 07:50), 0.42-4 (2012-05-15 08:38), 0.43-1 (2012-07-03 15:22), 0.43-4 (2012-08-21 19:25), 0.43-8 (2013-04-17 14:19), 0.45-8 (2014-01-09 22:22), 0.49-1 (2014-03-23 07:29), 0.49-2 (2014-03-28 00:38), 0.53-1 (2014-07-01 00:51), 0.53-5 (2014-08-04 15:29), 0.65-1 (2015-06-01 08:31), 1.1.1.1 (2015-08-20 19:24), 1.2.1.1 (2015-09-25 00:55), 1.3.1.1 (2016-02-29 11:39), 1.4.1.1 (2016-03-28 11:04), 1.5 (2016-05-31 19:53), 1.6 (2016-07-01 01:20), 1.7 (2016-07-31 23:20), 1.8 (2016-08-31 12:06), 1.9 (2016-10-02 10:12), 1.10 (2016-11-23 00:32), 1.11 (2017-03-01 19:05), 1.12 (2017-04-19 15:46), 1.13 (2017-07-18 13:46), 1.14 (2017-08-23 14:31), 1.15 (2017-09-20 05:24), 1.16 (2017-12-17 15:53), 1.17 (2018-06-27 18:43), 1.18 (2018-07-09 20:20), 1.19 (2018-12-14 00:11), 2.1 (2019-06-03 14:30), 2.2 (2019-06-24 08:00), 2.3 (2019-09-05 17:50), 2.4 (2019-10-21 23:00), 2.5 (2020-01-28 07:10), 2.6 (2020-02-05 14:10), 2.7 (2020-02-20 22:00), 2.8 (2020-04-10 22:10), 3.1 (2020-07-05 21:00), 3.2 (2020-12-03 18:20), 3.3 (2021-03-18 21:50), 3.4 (2021-05-13 16:20), 3.5 (2021-07-28 16:30), 3.6 (2021-09-03 23:30), 4.1 (2022-01-13 09:22), 4.2 (2022-04-12 00:40), 4.3 (2022-07-06 21:20), 4.4 (2022-11-21 18:40), 4.5 (2022-12-20 19:10), 4.6 (2023-01-11 18:00), 4.7 (2023-03-03 02:30), 5.1 (2023-04-17 17:30), 5.2 (2023-06-06 16:40), 5.3 (2023-07-15 22:40), 5.4 (2023-08-07 21:50), 5.5 (2023-12-02 17:10), 5.6 (2024-02-14 18:10), 5.7 (2024-03-31 11:50), 5.8 (2024-05-01 15:40), 5.9 (2024-06-02 18:40), 5.10 (2024-07-01 18:40)

Other packages that cited pomp R package

View pomp citation profile

Other R packages that pomp depends, imports, suggests or enhances

View pomp dependency map

Complete documentation for pomp

View documentation PDF

Functions, R codes and Examples using the pomp R package

Some associated functions: abc . accumvars . as_data_frame . as_pomp . bake . basic_components . basic_probes . betabinom . blowflies . bsflu . bsmc2 . bsplines . childhood . coef . conc . concat . cond_logLik . continue . covariate_table . covmat . csnippet . dacca . design . dinit . dinit_spec . dmeasure . dmeasure_spec . dprior . dprocess . dprocess_spec . ebola . eff_sample_size . elementary_algorithms . emeasure . emeasure_spec . estimation_algorithms . eulermultinom . filter_mean . filter_traj . flow . forecast . gompertz . hitch . kalman . kf . listie . load . loglik . logmeanexp . lookup . mcap . melt . mif2 . nlf . objfun . obs . ou2 . pStop . parameter_trans . parmat . partrans . parus . pfilter . plot . pmcmc . pomp-defunct . pomp-package . pomp . pomp_class . pomp_examp . pomp_fun . pred_mean . pred_var . print . prior_spec . probe . probe_match . proposals . resample . ricker . rinit . rinit_spec . rmeasure . rmeasure_spec . rprior . rprocess . rprocess_spec . rw2 . rw_sd . sannbox . saved_states . show . simulate . sir . skeleton . skeleton_spec . spect . spect_match . spy . states . summary . time . timezero . traces . traj_match . trajectory . transformations . undefined . userdata . verhulst . vmeasure . vmeasure_spec . window . workhorses . wpfilter . wquant .
Some associated R codes: abc.R . accumulators.R . as_data_frame.R . as_pomp.R . bake.R . basic_components.R . basic_probes.R . betabinom.R . blowflies.R . bsflu.R . bsmc2.R . bsplines.R . builder.R . childhood.R . coef.R . conc.R . concat.R . cond_logLik.R . continue.R . covariate_table.R . covmat.R . csnippet.R . dacca.R . defunct.R . design.R . dinit_spec.R . dmeasure_spec.R . dprocess_spec.R . ebola.R . eff_sample_size.R . elementary_algorithms.R . emeasure_spec.R . estimation_algorithms.R . eulermultinom.R . extract.R . filter_mean.R . filter_traj.R . flow.R . forecast.R . gompertz.R . kalman.R . kf.R . listie.R . load.R . loglik.R . logmeanexp.R . lookup.R . mcap.R . melt.R . mif2.R . nlf.R . objfun.R . obs.R . ou2.R . package.R . parameter_trans.R . parmat.R . parus.R . pfilter.R . plot.R . pmcmc.R . pomp.R . pomp_class.R . pomp_examp.R . pomp_fun.R . pred_mean.R . pred_var.R . print.R . prior_spec.R . probe.R . probe_match.R . profile_design.R . proposals.R . pstop.R . resample.R . ricker.R . rinit_spec.R . rmeasure_spec.R . rprocess_spec.R . runif_design.R . rw2.R . safecall.R . sannbox.R . saved_states.R . show.R . simulate.R . sir.R . skeleton_spec.R . slice_design.R . sobol_design.R . spect.R . spect_match.R . spy.R . states.R . summary.R . templates.R . time.R . timezero.R . traces.R . traj_match.R . trajectory.R . transformations.R . undefined.R . userdata.R . verhulst.R . vmeasure_spec.R . window.R . workhorses.R . wpfilter.R . wquant.R . Full pomp package functions and examples

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