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polyfreqs
View on CRAN: Click
here
Download and install polyfreqs package within the R console
Install from CRAN:
install.packages("polyfreqs")
Install from Github:
library("remotes")
install_github("cran/polyfreqs")
Install by package version:
library("remotes")
install_version("polyfreqs", "1.0.2")
Attach the package and use:
library("polyfreqs")
Maintained by
Paul Blischak
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2015-09-25
Latest Update: 2023-08-18
Description:
Implements a Gibbs sampling algorithm to perform Bayesian inference
on biallelic SNP frequencies, genotypes and heterozygosity (observed and
expected) in a population of autopolyploids. See the published paper in
Molecular Ecology Resources: Blischak et al. (2016) .
How to cite:
Paul Blischak (2015). polyfreqs: Bayesian Population Genomics in Autopolyploids. R package version 1.0.2, https://cran.r-project.org/web/packages/polyfreqs. Accessed 21 Dec. 2024.
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Functions, R codes and Examples using
the polyfreqs R package
Some associated functions: get_map_genotypes . point_Hexp . point_Hobs . polyfreqs . polyfreqs_pps . ref_reads . sim_reads . simple_freqs . total_reads .
Some associated R codes: RcppExports.R . data_desc.R . get_map_genotypes.R . point_Hexp.R . point_Hobs.R . polyfreqs.R . polyfreqs_pps.R . print_g.R . sim_reads.R . simple_freqs.R . Full polyfreqs package functions and examples
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