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polySegratioMM
View on CRAN: Click
here
Download and install polySegratioMM package within the R console
Install from CRAN:
install.packages("polySegratioMM")
Install from Github:
library("remotes")
install_github("cran/polySegratioMM")
Install by package version:
library("remotes")
install_version("polySegratioMM", "0.6-4")
Attach the package and use:
library("polySegratioMM")
Maintained by
Peter Baker
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2009-11-17
Latest Update: 2018-03-23
Description:
Fits Bayesian mixture models to estimate marker dosage for dominant markers in autopolyploids using JAGS (1.0 or greater) as outlined in Baker et al "Bayesian estimation of marker dosage in sugarcane and other autopolyploids" (2010, ). May be used in conjunction with polySegratio for simulation studies and comparison with standard methods.
How to cite:
Peter Baker (2009). polySegratioMM: Bayesian Mixture Models for Marker Dosage in Autopolyploids. R package version 0.6-4, https://cran.r-project.org/web/packages/polySegratioMM
Previous versions and publish date:
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Other R packages that polySegratioMM depends,
imports, suggests or enhances
Functions, R codes and Examples using
the polySegratioMM R package
Some associated functions: DistributionPlotBinomial . calculateDIC . diagnosticsJagsMix . dosagesJagsMix . dumpData . hexmarkers . hexmarkers.overdisp . mcmcHexRun . plot.segratioMCMC . plotFitted . polySegratioMM-package . print.dosagesMCMC . print.runJags . readJags . runJags . runSegratioMM . setControl . setInits . setModel . setPriors . summary.segratioMCMC . writeControlFile . writeJagsFile .
Some associated R codes: DistributionPlotBinomial.R . DistributionPlotGamma.R . DistributionPlotNorm.R . calculateDIC.R . diagnosticsJagsMix.R . dosagesJagsMix.R . dumpData.R . dumpInits.R . plot.runJagsWrapper.R . plot.segratioMCMC.R . plotFitted.R . plotTheoretical.R . print.dosagesMCMC.R . print.runJags.R . print.runJagsWrapper.R . print.segratioMCMC.R . readJags.R . runJags.R . runSegratioMM.R . setControl.R . setInits.R . setModel.R . setPriors.R . summary.segratioMCMC.R . writeControlFile.R . writeJagsFile.R . Full polySegratioMM package functions and examples
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