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pmcalibration
View on CRAN: Click
here
Download and install pmcalibration package within the R console
Install from CRAN:
install.packages("pmcalibration")
Install from Github:
library("remotes")
install_github("cran/pmcalibration")
Install by package version:
library("remotes")
install_version("pmcalibration", "0.1.0")
Attach the package and use:
library("pmcalibration")
Maintained by
Stephen Rhodes
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2023-09-06
Latest Update: 2023-09-06
Description:
Fit calibrations curves for clinical prediction models and calculate several associated
metrics (Eavg, E50, E90, Emax). Ideally predicted probabilities from a prediction model
should align with observed probabilities. Calibration curves relate predicted probabilities
(or a transformation thereof) to observed outcomes via a flexible non-linear smoothing function.
'pmcalibration' allows users to choose between several smoothers (regression splines, generalized
additive models/GAMs, lowess, loess). Both binary and time-to-event outcomes are supported.
See Van Calster et al. (2016) ;
Austin and Steyerberg (2019) ;
Austin et al. (2020) .
How to cite:
Stephen Rhodes (2023). pmcalibration: Calibration Curves for Clinical Prediction Models. R package version 0.1.0, https://cran.r-project.org/web/packages/pmcalibration
Previous versions and publish date:
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imports, suggests or enhances
Functions, R codes and Examples using
the pmcalibration R package
Some associated functions: boot . cal_metrics . gam_cal . get_cc . glm_cal . invlogit . loess_cal . logistic_cal . logit . lowess_cal . plot.pmcalibration . pmcalibration-package . pmcalibration . predict_lowess . print.logistic_cal . print.logistic_calsummary . print.pmcalibration . print.pmcalibrationsummary . reg_spline_X . run_boots . sim_dat . simb . summary.logistic_cal . summary.pmcalibration .
Some associated R codes: boots.R . cal_metrics.R . gam_cal.R . glm_cal.R . loess_cal.R . lowess_cal.R . pmcalibration-package.R . pmcalibration.R . reg_spline_X.R . simb.R . utils.R . Full pmcalibration package functions and examples
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