R package citation, R package reverse dependencies, R package scholars, install an r package from GitHub hy is package acceptance pending why is package undeliverable amazon why is package on hold dhl tour packages why in r package r and r package full form why is r free why r is bad which r package to install which r package has which r package which r package version which r package readxl which r package ggplot which r package fread which r package license where is package.json where is package-lock.json where is package.swift where is package explorer in eclipse where is package where is package manager unity where is package installer android where is package manager console in visual studio who r package which r package to install which r package version who is package who is package deal who is package design r and r package full form r and r package meaning what r package has what package r what is package in java what is package what is package-lock.json what is package in python what is package.json what is package installer do r package can't install r packages r can't find package r can't load package can't load xlsx package r can't install psych package r can't install sf package r Write if else in NONMEM pk pd
pmartR
View on CRAN: Click
here
Download and install pmartR package within the R console
Install from CRAN:
install.packages("pmartR")
Install from Github:
library("remotes")
install_github("cran/pmartR") Install by package version:
library("remotes")
install_version("pmartR", "2.5.1") Attach the package and use:
library("pmartR")
Maintained by
Lisa Bramer
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2023-12-06
Latest Update: 2025-04-23
Description:
Provides functionality for quality control processing and statistical analysis of mass spectrometry (MS) omics data, in particular proteomic (either at the peptide or the protein level), lipidomic, and metabolomic data, as well as RNA-seq based count data and nuclear magnetic resonance (NMR) data. This includes data transformation, specification of groups that are to be compared against each other, filtering of features and/or samples, data normalization, data summarization (correlation, PCA), and statistical comparisons between defined groups. Implements methods described in: Webb-Robertson et al. (2014) . Webb-Robertson et al. (2011) . Matzke et al. (2011) . Matzke et al. (2013) . Polpitiya et al. (2008) . Webb-Robertson et al. (2010) .
How to cite:
Lisa Bramer (2023). pmartR: Panomics Marketplace - Quality Control and Statistical Analysis for Panomics Data. R package version 2.5.1, https://cran.r-project.org/web/packages/pmartR. Accessed 05 Jun. 2026.
Previous versions and publish date:
Other packages that cited pmartR R package
View pmartR citation profile
Other R packages that pmartR depends,
imports, suggests or enhances
Complete documentation for pmartR
Functions, R codes and Examples using
the pmartR R package
Some associated functions: DESeq2_wrapper . RNA_filter . all_subset . anova_filter . anova_test . applyFilt . as.isobaricpepData . as.lipidData . as.metabData . as.multiData . as.nmrData . as.pepData . as.proData . as.seqData . as.trelliData.edata . as.trelliData . bpquant . bpquant_mod . column_matches_exact . combine_lipidData . combine_techreps . complete_mols . cor_result . create_comparisonDF . custom_filter . custom_sampnames . cv_filter . diffexp_seq . dim_reduction . dispersion_est . dot-is_edata . edata_replace . edata_summary . edata_transform . edgeR_wrapper . find_fmeta_cnames . fit_surv . fmeta_matches . get_check_names . get_comparisons . get_data_class . get_data_info . get_data_norm . get_data_scale . get_data_scale_orig . get_edata_cname . get_emeta_cname . get_fdata_cname . get_filter_type . get_filters . get_group_DF . get_group_formula . get_group_table . get_isobaric_info . get_isobaric_norm . get_lsmeans . get_meta_info . get_nmr_info . get_nmr_norm . get_pred_grid . get_spans_params . group_comparison_anova . group_comparison_imd . group_designation . gtest_filter . gtest_heatmap . imd_anova . imd_test . imdanova_filter . los . mad_transform . make_volcano_plot_df . mean_center . median_center . missingval_result . molecule_filter . nonmissing_per_group . normRes_tests . normalize_global . normalize_global_basic . normalize_isobaric . normalize_loess . normalize_nmr . normalize_quantile . p_adjustment_anova . plot-RNAFilt . plot-SPANSRes . plot-corRes . plot-customFilt . plot-cvFilt . plot-dataRes . plot-dimRes . plot-imdanovaFilt . plot-isobaricnormRes . plot-isobaricpepData . plot-lipidData . plot-metabData . plot-moleculeFilt . plot-naRes . plot-nmrData . plot-nmrnormRes . plot-normRes . plot-pepData . plot-proData . plot-proteomicsFilt . plot-rmdFilt . plot-seqData . plot-totalCountFilt . plot.statRes . plot_km . pmartR . pmartR_filter_worker . ppp . ppp_rip . pquant . pre_imdanova_melt . prep_flags . print-RNAFilt . print-customFilt . print-cvFilt . print-dataRes . print-imdanovaFilt . print-lipidData . print-metabData . print-moleculeFilt . print-normRes . print-pepData . print-proData . print-proteomicsFilt . print-rmdFilt . print-seqData . print-totalCountFilt . print.RNAFiltSummary . print.customFilterSummary . print.cvFilterSummary . print.imdanovaFilterSummary . print.moleculeFilterSummary . print.proteomicsFilterSummary . print.rmdFilterSummary . print.totalCountFiltSummary . protein_quant . proteomics_filter . qrollup . reexports . replace_nas . replace_zeros . report_dataRes . rip . rmd_conversion . rmd_filter . rrollup . run_group_meancor . run_kurtosis . run_mad . run_prop_missing . run_skewness . set_check_names . set_data_info . set_filter . set_isobaric_info . set_meta_info . set_nmr_info . spans_make_distribution . spans_procedure . statRes-class . statRes_output . statres_barplot . statres_volcano_plot . summary-isobaricnormRes . summary-nmrnormRes . summary-omicsData . summary-pmartR-results . summary-trelliData . summary.RNAFilt . summary.customFilt . summary.cvFilt . summary.imdanovaFilt . summary.moleculeFilt . summary.proteomicsFilt . summary.rmdFilt . summary.totalCountFilt . summary_km . surv_designation . take_diff . total_count_filter . trelli_abundance_boxplot . trelli_abundance_heatmap . trelli_abundance_histogram . trelli_foldchange_bar . trelli_foldchange_boxplot . trelli_foldchange_heatmap . trelli_foldchange_volcano . trelli_missingness_bar . trelli_panel_by . trelli_precheck . trelli_pvalue_filter . vector_replace . voom_wrapper . zrollup . zscore_transform .
Some associated R codes: MSnSet2pepData.R . RcppExports.R . applyFilt.R . as.multiData.R . as.omicsData.R . as.trelliData.R . bpquant.R . combine_lipidData.R . combine_techreps.R . cor_result.R . custom_sampnames.R . dim_reduction.R . dopar.R . edata_replace.R . edata_summary.R . edata_transform.R . filter_objects.R . filter_summary.R . get_comparisons.R . group_designation.R . helper_fn.R . imd_anova.R . missingval_result.R . nonmissing_per_group.R . normRes_tests.R . norm_funcs.R . normalize_global.R . normalize_isobaric.R . normalize_loess.R . normalize_nmr.R . normalize_quantile.R . pipe.R . plot_fns.R . pmartR.R . pre_imdanova_melt.R . print_data_objects.R . print_filter_objects.R . protein_quant.R . report_dataRes.R . results_summary.R . rmd_conversion.R . seqData_wrappers.R . spans.R . statRes_class.R . subset_funcs.R . summary_isobaricnormRes.R . summary_nmrnormRes.R . summary_pmartR.R . summary_trelliData.R . surv_designation.R . survival.R . trelliPlots.R . Full pmartR package functions and examples
Downloads during the last 30 days
Today's Hot Picks in Authors and Packages
msm
Functions for fitting continuous-time Markov and hidden
Markov multi-state models to longitudinal d ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Christopher Jackson (view profile)
quickcode
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Obinna Obianom (view profile)
crossurr
Doubly robust methods for evaluating surrogate markers as outlined in: Agniel D, Hejblum BP, Thiebau ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Denis Agniel (view profile)
ibb
Call wrappers for Istanbul Metropolitan
Municipality's Open Data Portal (Turkish: Istanbul B ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Berk Orbay (view profile)
envirem
Generation of bioclimatic rasters that are complementary to the typical 19 bioclim variables. ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Pascal Title (view profile)
27,268
R Packages
233,548
Dependencies
72,590
Author Associations
27,205
Publication Badges
