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plsgenomics
View on CRAN: Click
here
Download and install plsgenomics package within the R console
Install from CRAN:
install.packages("plsgenomics")
Install from Github:
library("remotes")
install_github("cran/plsgenomics")
Install by package version:
library("remotes")
install_version("plsgenomics", "1.5-3")
Attach the package and use:
library("plsgenomics")
Maintained by
Ghislain Durif
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2005-04-11
Latest Update: 2018-08-24
Description:
Routines for PLS-based genomic analyses,
implementing PLS methods for classification with
microarray data and prediction of transcription factor
activities from combined ChIP-chip analysis. The >=1.2-1
versions include two new classification methods for microarray
data: GSIM and Ridge PLS. The >=1.3 versions includes a
new classification method combining variable selection and
compression in logistic regression context: logit-SPLS; and
an adaptive version of the sparse PLS.
How to cite:
Ghislain Durif (2005). plsgenomics: PLS Analyses for Genomics. R package version 1.5-3, https://cran.r-project.org/web/packages/plsgenomics. Accessed 21 Nov. 2024.
Previous versions and publish date:
1.0 (2005-04-11 22:33), 1.1.1 (2005-12-16 15:18), 1.1.2 (2005-12-21 17:29), 1.1 (2005-05-10 23:13), 1.2-1 (2006-09-29 12:20), 1.2-2 (2007-02-15 13:10), 1.2-4 (2009-05-29 15:19), 1.2-6 (2014-12-25 12:14), 1.2 (2006-04-04 10:53), 1.3-1 (2015-05-11 17:05), 1.3-2 (2017-05-02 18:39), 1.3 (2015-05-07 18:02), 1.5-1 (2017-09-14 16:26), 1.5-2.1 (2023-11-27 14:25), 1.5-2 (2018-08-24 10:30), 1.5 (2017-08-30 14:50)
Other packages that cited plsgenomics R package
View plsgenomics citation profile
Other R packages that plsgenomics depends,
imports, suggests or enhances
Complete documentation for plsgenomics
Functions, R codes and Examples using
the plsgenomics R package
Some associated functions: Colon . Ecoli . SRBCT . TFA.estimate . gsim.cv . gsim . leukemia . logit.spls.cv . logit.spls . logit.spls.stab . matrix.heatmap . mgsim.cv . mgsim . mrpls.cv . mrpls . multinom.spls.cv . multinom.spls . multinom.spls.stab . pls.lda.cv . pls.lda . pls.regression.cv . pls.regression . plsgenomics-deprecated . plsgenomics-internal . preprocess . rpls.cv . rpls . sample.bin . sample.cont . sample.multinom . spls.cv . spls . spls.stab . stability.selection.heatmap . stability.selection . variable.selection .
Some associated R codes: TFA.estimate.R . deprecated.R . gsim.R . gsim.aux.R . gsim.cv.R . hplugin.R . internal.R . logit.spls.R . logit.spls.aux.R . logit.spls.cv.R . logit.spls.stab.R . matrix.heatmap.R . mgsim.R . mgsim.cv.R . mgsimaux.R . mrpls.R . mrpls.cv.R . mrplsaux.R . multinom.spls.R . multinom.spls.aux.R . multinom.spls.cv.R . multinom.spls.stab.R . mwirrls.R . pls.lda.R . pls.lda.cv.R . pls.regression.R . pls.regression.cv.R . preprocess.R . rpls.R . rpls.cv.R . rplsaux.R . sample.bin.R . sample.cont.R . sample.multinom.R . spls.R . spls.aux.R . spls.cv.R . spls.in.R . spls.stab.R . stability.selection.R . ust.R . ust.adapt.R . utils.R . variable.selection.R . wirrls.R . wpls.R . zzz.R . Full plsgenomics package functions and examples
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