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plinkFile  

'PLINK' (and 'GCTA') File Helpers
View on CRAN: Click here


Download and install plinkFile package within the R console
Install from CRAN:
install.packages("plinkFile")

Install from Github:
library("remotes")
install_github("cran/plinkFile")

Install by package version:
library("remotes")
install_version("plinkFile", "0.2.1")



Attach the package and use:
library("plinkFile")
Maintained by
Xiaoran Tong
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2020-04-05
Latest Update: 2023-11-24
Description:
Reads/write binary genotype file compatible with 'PLINK' into/from a R matrix; traverse genotype data one windows of variants at a time, like apply() or a for loop; reads/writes genotype relatedness/kinship matrices created by 'PLINK' or 'GCTA' into/from a R square matrix. It is best used for bringing data produced by 'PLINK' and 'GCTA' into R workflow.
How to cite:
Xiaoran Tong (2020). plinkFile: 'PLINK' (and 'GCTA') File Helpers. R package version 0.2.1, https://cran.r-project.org/web/packages/plinkFile. Accessed 22 Dec. 2024.
Previous versions and publish date:
0.1.0 (2020-04-05 17:30)
Other packages that cited plinkFile R package
View plinkFile citation profile
Other R packages that plinkFile depends, imports, suggests or enhances
Complete documentation for plinkFile
Functions, R codes and Examples using the plinkFile R package
Some associated functions: CHR . DBT . bed . readBED . readBIM . readBSM . readFAM . readGRM . readIBS . readIID . readREL . readVCM . readVID . saveBED . saveBSM . saveGRM . testReadBED . testReadBSM . 
Some associated R codes: bed.R . hlp.R . ini.R . rel.R . utl.R .  Full plinkFile package functions and examples
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