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pliman  

Tools for Plant Image Analysis
View on CRAN: Click here


Download and install pliman package within the R console
Install from CRAN:
install.packages("pliman")

Install from Github:
library("remotes")
install_github("cran/pliman")

Install by package version:
library("remotes")
install_version("pliman", "3.0.0")



Attach the package and use:
library("pliman")
Maintained by
Tiago Olivoto
[Scholar Profile | Author Map]
First Published: 2021-05-15
Latest Update: 2023-10-14
Description:
Tools for single or batch image manipulation and analysis as described by Olivoto (2022) that can be used to quantify plant leaf area, assess disease severity, count objects, obtain shape measures, object landmarks, and compute Elliptical Fourier Analysis of the object outline, as described by Claude (2008) . Additionally, the package includes tools for analyzing grids, which enables high throughput field phenotyping using RGB imagery captured by unmanned aerial vehicles.
How to cite:
Tiago Olivoto (2021). pliman: Tools for Plant Image Analysis. R package version 3.0.0, https://cran.r-project.org/web/packages/pliman. Accessed 01 May. 2025.
Previous versions and publish date:
0.2.0 (2021-05-15 13:20), 0.3.0 (2021-06-10 06:50), 1.0.0 (2021-11-10 01:20), 1.1.0 (2021-12-10 09:30), 2.0.0 (2023-07-15 08:00), 2.0.1 (2023-09-11 22:50), 2.1.0 (2023-10-14 19:40)
Other packages that cited pliman R package
View pliman citation profile
Other R packages that pliman depends, imports, suggests or enhances
Complete documentation for pliman
Functions, R codes and Examples using the pliman R package
Some associated functions: analyze_objects . analyze_objects_shp . apply_fun_to_imgs . as_image . calibrate . contours . custom_palette . dist_transform . efourier . efourier_coefs . efourier_error . efourier_inv . efourier_norm . efourier_power . efourier_shape . ellipse . get_pliman_viewer . ggplot_color . image_align . image_augment . image_binary . image_combine . image_create . image_expand . image_index . image_prepare . image_segment . image_segment_kmeans . image_segment_manual . image_segment_mask . image_shp . image_square . image_thinning_guo_hall . image_to_mat . image_view . landmarks . landmarks_add . landmarks_angle . landmarks_dist . landmarks_regradi . leading_zeros . make_brush . make_mask . measure_disease . measure_disease_byl . measure_disease_shp . mosaic_crop . mosaic_index . mosaic_input . mosaic_prepare . mosaic_to_pliman . mosaic_to_rgb . mosaic_view . object_edge . object_export . object_export_shp . object_label . object_map . object_mark . object_rgb . object_split . object_split_shp . object_to_color . otsu . palettes . pipe . pixel_index . pliman_images . pliman_viewer . plot.image_shp . plot_index . plot_index_shp . plot_lw . poly_apex_base_angle . poly_pcv . poly_width_at . prepare_to_shp . random_color . sad . separate_col . set_pliman_viewer . summary_index . utils_colorspace . utils_dpi . utils_file . utils_image . utils_measures . utils_objects . utils_pca . utils_pick . utils_polygon . utils_polygon_plot . utils_rows_cols . utils_shapes . utils_stats . utils_transform . utils_wd . watershed2 . 
Some associated R codes: RcppExports.R . analyze_objects.R . apply_fun_to_imgs.R . edge.R . measure_disease.R . measure_disease_byl.R . pliman-package.R . sad.R . utilities.R . utils_efourier.R . utils_file.R . utils_imagem.R . utils_landmarks.R . utils_mapedit.R . utils_mask.R . utils_measures.R . utils_mosaic.R . utils_objects.R . utils_pick.R . utils_pipe.R . utils_polygon.R . utils_segmentation.R . utils_shapes.R . utils_shp.R . zzz.R .  Full pliman package functions and examples
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