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pipeGS  

Permutation p-Value Estimation for Gene Set Tests
View on CRAN: Click here


Download and install pipeGS package within the R console
Install from CRAN:
install.packages("pipeGS")

Install from Github:
library("remotes")
install_github("cran/pipeGS")

Install by package version:
library("remotes")
install_version("pipeGS", "0.4")



Attach the package and use:
library("pipeGS")
Maintained by
Hera He
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2016-11-17
Latest Update: 2018-02-02
Description:
Code for various permutation p-values estimation methods for gene set test. The description of corresponding methods can be found in the dissertation of Yu He(2016) "Efficient permutation P-value estimation for gene set tests" . One of the methods also corresponds to the paper "Permutation p-value approximation via generalized Stolarsky invariance" .
How to cite:
Hera He (2016). pipeGS: Permutation p-Value Estimation for Gene Set Tests. R package version 0.4, https://cran.r-project.org/web/packages/pipeGS
Previous versions and publish date:
0.1 (2016-11-17 01:48), 0.2 (2017-08-07 00:41), 0.3 (2017-11-26 05:17), 0.4 (2018-02-02 19:30)
Other packages that cited pipeGS R package
View pipeGS citation profile
Other R packages that pipeGS depends, imports, suggests or enhances
Functions, R codes and Examples using the pipeGS R package
Some associated functions: get.phat.linear . get.phat.quadratic . pipegs . 
Some associated R codes: functiondef.R . main.R . montecarlo.R . nested.R . normalize.R . parallelexact.R . pipegs.R . saddlepoint.R . stolarsky.R .  Full pipeGS package functions and examples
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