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piglet  

Program for Inferring Ig Allele Similarity Clusters and Genotypes
View on CRAN: Click here


Download and install piglet package within the R console
Install from CRAN:
install.packages("piglet")

Install from Github:
library("remotes")
install_github("cran/piglet")

Install by package version:
library("remotes")
install_version("piglet", "1.0.1")



Attach the package and use:
library("piglet")
Maintained by
Ayelet Peres
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2023-06-13
Latest Update: 2023-11-01
Description:
Improves genotype inference and downstream AIRR-seq data analysis. Inference of allele similarity clusters, an alternative naming scheme and genotype inference for IGH repertoires. The main tools are allele similarity clusters (ASC), and allele based genotype. The first tool is designed to reduce the ambiguity within the IGHV alleles. The ambiguity is caused by duplicated or similar alleles which are shared among different genes. The second tool is an allele based genotype, that determined the presence of an allele based on a threshold derived from a naive population. Citation: Peres, et al (2022) .
How to cite:
Ayelet Peres (2023). piglet: Program for Inferring Ig Allele Similarity Clusters and Genotypes. R package version 1.0.1, https://cran.r-project.org/web/packages/piglet. Accessed 21 Nov. 2024.
Previous versions and publish date:
1.0.0 (2023-06-13 10:20), 1.0.1 (2023-08-16 11:40)
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