Other packages > Find by keyword >

piglet  

Program for Inferring Immunoglobulin Allele Similarity Clusters and Genotypes
View on CRAN: Click here


Download and install piglet package within the R console
Install from CRAN:
install.packages("piglet")

Install from Github:
library("remotes")
install_github("cran/piglet")

Install by package version:
library("remotes")
install_version("piglet", "1.0.7")



Attach the package and use:
library("piglet")
Maintained by
Ayelet Peres
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2023-06-13
Latest Update: 2023-11-01
Description:
Improves genotype inference and downstream AIRR-seq data analysis. Inference of allele similarity clusters, an alternative naming scheme and genotype inference for IGH repertoires. The main tools are allele similarity clusters (ASC), and allele based genotype. The first tool is designed to reduce the ambiguity within the IGHV alleles. The ambiguity is caused by duplicated or similar alleles which are shared among different genes. The second tool is an allele based genotype, that determined the presence of an allele based on a threshold derived from a naive population. Citation: Peres, et al (2022) .
How to cite:
Ayelet Peres (2023). piglet: Program for Inferring Immunoglobulin Allele Similarity Clusters and Genotypes. R package version 1.0.7, https://cran.r-project.org/web/packages/piglet. Accessed 06 May. 2025.
Previous versions and publish date:
1.0.0 (2023-06-13 10:20), 1.0.1 (2023-08-16 11:40), 1.0.7 (2025-04-09 12:00)
Other packages that cited piglet R package
View piglet citation profile
Other R packages that piglet depends, imports, suggests or enhances
Complete documentation for piglet
Functions, R codes and Examples using the piglet R package
Full piglet package functions and examples
Downloads during the last 30 days
04/0704/0804/0904/1004/1104/1204/1304/1404/1504/1604/1704/1804/1904/2004/2104/2204/2304/2404/2504/2804/2905/01Downloads for piglet051015202530354045505560TrendBars

Today's Hot Picks in Authors and Packages

rotations  
Working with Rotation Data
Tools for working with rotational data, including simulation from the most commonly used distributi ...
Download / Learn more Package Citations See dependency  
HuraultMisc  
Guillem Hurault Functions' Library
Contains various functions for data analysis, notably helpers and diagnostics for Bayesian modelling ...
Download / Learn more Package Citations See dependency  
tbrf  
Time-Based Rolling Functions
Provides rolling statistical functions based on date and time windows instead of n-lagged observatio ...
Download / Learn more Package Citations See dependency  
netUtils  
A Collection of Tools for Network Analysis
Provides a collection of network analytic (convenience) functions which are missing in other standar ...
Download / Learn more Package Citations See dependency  
r2resize  
In-Text Resize for Images, Tables and Fancy Resize Containers in 'shiny', 'rmarkdown' and 'quarto' Documents
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency  
simfam  
Simulate and Model Family Pedigrees with Structured Founders
The focus is on simulating and modeling families with founders drawn from a structured population (f ...
Download / Learn more Package Citations See dependency  

24,205

R Packages

207,311

Dependencies

65,312

Author Associations

24,206

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA