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phylotypr  

Classifying DNA Sequences to Taxonomic Groupings
View on CRAN: Click here


Download and install phylotypr package within the R console
Install from CRAN:
install.packages("phylotypr")

Install from Github:
library("remotes")
install_github("cran/phylotypr")

Install by package version:
library("remotes")
install_version("phylotypr", "0.1.1")



Attach the package and use:
library("phylotypr")
Maintained by
Pat Schloss
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2024-10-14
Latest Update: 2025-02-21
Description:
Classification based analysis of DNA sequences to taxonomic groupings. This package primarily implements Naive Bayesian Classifier from the Ribosomal Database Project. This approach has traditionally been used to classify 16S rRNA gene sequences to bacterial taxonomic outlines; however, it can be used for any type of gene sequence. The method was originally described by Wang, Garrity, Tiedje, and Cole in Applied and Environmental Microbiology 73(16):5261-7 <doi:10.1128/AEM.00062-07>. The package also provides functions to read in 'FASTA'-formatted sequence data.
How to cite:
Pat Schloss (2024). phylotypr: Classifying DNA Sequences to Taxonomic Groupings. R package version 0.1.1, https://cran.r-project.org/web/packages/phylotypr. Accessed 29 Jul. 2026.
Previous versions and publish date:
(2026-07-09 06:41), 0.1.0 (2024-10-14 11:20)
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Complete documentation for phylotypr
Functions, R codes and Examples using the phylotypr R package
Full phylotypr package functions and examples
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