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phylosignalDB  

Explore Phylogenetic Signals Using Distance-Based Methods
View on CRAN: Click here


Download and install phylosignalDB package within the R console
Install from CRAN:
install.packages("phylosignalDB")

Install from Github:
library("remotes")
install_github("cran/phylosignalDB")

Install by package version:
library("remotes")
install_version("phylosignalDB", "0.2.2")



Attach the package and use:
library("phylosignalDB")
Maintained by
Liang Yao
[Scholar Profile | Author Map]
First Published: 2025-01-16
Latest Update: 2025-01-16
Description:
A unified method, called M statistic, is provided for detecting phylogenetic signals in continuous traits, discrete traits, and multi-trait combinations. Blomberg and Garland (2002) <doi:10.1046/j.1420-9101.2002.00472.x> provided a widely accepted statistical definition of the phylogenetic signal, which is the "tendency for related species to resemble each other more than they resemble species drawn at random from the tree". The M statistic strictly adheres to the definition of phylogenetic signal, formulating an index and developing a method of testing in strict accordance with the definition, instead of relying on correlation analysis or evolutionary models. The novel method equivalently expressed the textual definition of the phylogenetic signal as an inequality equation of the phylogenetic and trait distances and constructed the M statistic. Also, there are more distance-based methods under development.
How to cite:
Liang Yao (2025). phylosignalDB: Explore Phylogenetic Signals Using Distance-Based Methods. R package version 0.2.2, https://cran.r-project.org/web/packages/phylosignalDB. Accessed 21 Feb. 2025.
Previous versions and publish date:
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Complete documentation for phylosignalDB
Functions, R codes and Examples using the phylosignalDB R package
Full phylosignalDB package functions and examples
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