Other packages > Find by keyword >

phyloseqGraphTest  

Graph-Based Permutation Tests for Microbiome Data
View on CRAN: Click here


Download and install phyloseqGraphTest package within the R console
Install from CRAN:
install.packages("phyloseqGraphTest")

Install from Github:
library("remotes")
install_github("cran/phyloseqGraphTest")

Install by package version:
library("remotes")
install_version("phyloseqGraphTest", "0.1.1")



Attach the package and use:
library("phyloseqGraphTest")
Maintained by
Julia Fukuyama
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2018-03-15
Latest Update: 2024-02-05
Description:
Provides functions for graph-based multiple-sample testing and visualization of microbiome data, in particular data stored in 'phyloseq' objects. The tests are based on those described in Friedman and Rafsky (1979) , and the tests are described in more detail in Callahan et al. (2016) .
How to cite:
Julia Fukuyama (2018). phyloseqGraphTest: Graph-Based Permutation Tests for Microbiome Data. R package version 0.1.1, https://cran.r-project.org/web/packages/phyloseqGraphTest. Accessed 06 Mar. 2026.
Previous versions and publish date:
0.0.1 (2018-03-15 16:52), 0.0.2 (2018-06-27 06:36), 0.1.0 (2020-02-07 17:30)
Other packages that cited phyloseqGraphTest R package
View phyloseqGraphTest citation profile
Other R packages that phyloseqGraphTest depends, imports, suggests or enhances
Complete documentation for phyloseqGraphTest
Functions, R codes and Examples using the phyloseqGraphTest R package
Some associated functions: graph_perm_test . permute . phyloseqGraphTest-package . plot_permutations . plot_test_network . print.psgraphtest . validGrouping . 
Some associated R codes: graphtest-functions.R . package-doc.R .  Full phyloseqGraphTest package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

EMVS  
The Expectation-Maximization Approach to Bayesian Variable Selection
An efficient expectation-maximization algorithm for fitting Bayesian spike-and-slab regularization p ...
Download / Learn more Package Citations See dependency  
DatabionicSwarm  
Swarm Intelligence for Self-Organized Clustering
Algorithms implementing populations of agents that interact with one another and sense their environ ...
Download / Learn more Package Citations See dependency  
solitude  
An Implementation of Isolation Forest
Isolation forest is anomaly detection method introduced by the paper Isolation based Anomaly Detecti ...
Download / Learn more Package Citations See dependency  
lbfgs  
Limited-memory BFGS Optimization
A wrapper built around the libLBFGS optimization library by Naoaki Okazaki. The lbfgs package implem ...
Download / Learn more Package Citations See dependency  
r2resize  
In-Text Resize for Images, Tables and Fancy Resize Containers in 'shiny', 'rmarkdown' and 'quarto' Documents
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency  
openxlsx  
Read, Write and Edit xlsx Files
Simplifies the creation of Excel .xlsx files by providing a high level interface to writing, stylin ...
Download / Learn more Package Citations See dependency  

26,264

R Packages

223,360

Dependencies

70,244

Author Associations

26,265

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA