Other packages > Find by keyword >

phyloseqGraphTest  

Graph-Based Permutation Tests for Microbiome Data
View on CRAN: Click here


Download and install phyloseqGraphTest package within the R console
Install from CRAN:
install.packages("phyloseqGraphTest")

Install from Github:
library("remotes")
install_github("cran/phyloseqGraphTest")

Install by package version:
library("remotes")
install_version("phyloseqGraphTest", "0.1.1")



Attach the package and use:
library("phyloseqGraphTest")
Maintained by
Julia Fukuyama
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2018-03-15
Latest Update: 2024-02-05
Description:
Provides functions for graph-based multiple-sample testing and visualization of microbiome data, in particular data stored in 'phyloseq' objects. The tests are based on those described in Friedman and Rafsky (1979) , and the tests are described in more detail in Callahan et al. (2016) .
How to cite:
Julia Fukuyama (2018). phyloseqGraphTest: Graph-Based Permutation Tests for Microbiome Data. R package version 0.1.1, https://cran.r-project.org/web/packages/phyloseqGraphTest. Accessed 05 Jun. 2026.
Previous versions and publish date:
0.0.1 (2018-03-15 16:52), 0.0.2 (2018-06-27 06:36), 0.1.0 (2020-02-07 17:30)
Other packages that cited phyloseqGraphTest R package
View phyloseqGraphTest citation profile
Other R packages that phyloseqGraphTest depends, imports, suggests or enhances
Complete documentation for phyloseqGraphTest
Functions, R codes and Examples using the phyloseqGraphTest R package
Some associated functions: graph_perm_test . permute . phyloseqGraphTest-package . plot_permutations . plot_test_network . print.psgraphtest . validGrouping . 
Some associated R codes: graphtest-functions.R . package-doc.R .  Full phyloseqGraphTest package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

crossurr  
Cross-Fitting for Doubly Robust Evaluation of High-Dimensional Surrogate Markers
Doubly robust methods for evaluating surrogate markers as outlined in: Agniel D, Hejblum BP, Thiebau ...
Download / Learn more Package Citations See dependency  
envirem  
Generation of ENVIREM Variables
Generation of bioclimatic rasters that are complementary to the typical 19 bioclim variables. ...
Download / Learn more Package Citations See dependency  
quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  
msm  
Multi-State Markov and Hidden Markov Models in Continuous Time
Functions for fitting continuous-time Markov and hidden Markov multi-state models to longitudinal d ...
Download / Learn more Package Citations See dependency  
ibb  
R Wrapper for Istanbul Municipality Open Data Portal
Call wrappers for Istanbul Metropolitan Municipality's Open Data Portal (Turkish: Istanbul B ...
Download / Learn more Package Citations See dependency  

27,268

R Packages

233,548

Dependencies

72,590

Author Associations

27,205

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA