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phyloseqGraphTest  

Graph-Based Permutation Tests for Microbiome Data
View on CRAN: Click here


Download and install phyloseqGraphTest package within the R console
Install from CRAN:
install.packages("phyloseqGraphTest")

Install from Github:
library("remotes")
install_github("cran/phyloseqGraphTest")

Install by package version:
library("remotes")
install_version("phyloseqGraphTest", "0.1.1")



Attach the package and use:
library("phyloseqGraphTest")
Maintained by
Julia Fukuyama
[Scholar Profile | Author Map]
First Published: 2018-03-15
Latest Update: 2024-02-05
Description:
Provides functions for graph-based multiple-sample testing and visualization of microbiome data, in particular data stored in 'phyloseq' objects. The tests are based on those described in Friedman and Rafsky (1979) , and the tests are described in more detail in Callahan et al. (2016) .
How to cite:
Julia Fukuyama (2018). phyloseqGraphTest: Graph-Based Permutation Tests for Microbiome Data. R package version 0.1.1, https://cran.r-project.org/web/packages/phyloseqGraphTest. Accessed 06 May. 2025.
Previous versions and publish date:
0.0.1 (2018-03-15 16:52), 0.0.2 (2018-06-27 06:36), 0.1.0 (2020-02-07 17:30)
Other packages that cited phyloseqGraphTest R package
View phyloseqGraphTest citation profile
Other R packages that phyloseqGraphTest depends, imports, suggests or enhances
Complete documentation for phyloseqGraphTest
Functions, R codes and Examples using the phyloseqGraphTest R package
Some associated functions: graph_perm_test . permute . phyloseqGraphTest-package . plot_permutations . plot_test_network . print.psgraphtest . validGrouping . 
Some associated R codes: graphtest-functions.R . package-doc.R .  Full phyloseqGraphTest package functions and examples
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