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phylopred  

Predicting Species Interactions from Phylogenetic Distance
View on CRAN: Click here


Download and install phylopred package within the R console
Install from CRAN:
install.packages("phylopred")

Install from Github:
library("remotes")
install_github("cran/phylopred")

Install by package version:
library("remotes")
install_version("phylopred", "0.1.0")



Attach the package and use:
library("phylopred")
Maintained by
Angel Robles
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2026-10-14
Latest Update: 2026-10-14
Description:
Tools to model and predict host-parasite (and other pairwise species) interactions from phylogenetic distance under presence-only data. Provides pairwise host-sharing logistic models with cluster-aware bootstrap and slope comparison between clades, presence-only performance metrics (a threshold efficiency metric and a phylogenetic partial receiver operating characteristic (ROC) adapted from Peterson, Papes and Soberon (2008) <doi:10.1016/j.ecolmodel.2007.11.008>), positive-unlabeled host prediction, and leave-hosts-out validation. Methods build on Robles-Fernandez and Lira-Noriega (2017) <doi:10.3389/fams.2017.00017>.
How to cite:
Angel Robles (2026). phylopred: Predicting Species Interactions from Phylogenetic Distance. R package version 0.1.0, https://cran.r-project.org/web/packages/phylopred. Accessed 25 Oct. 2026.
Previous versions and publish date:
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Complete documentation for phylopred
Functions, R codes and Examples using the phylopred R package
Full phylopred package functions and examples
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