Other packages > Find by keyword >

phylopairs  

Comparative Analyses of Lineage-Pair Traits
View on CRAN: Click here


Download and install phylopairs package within the R console
Install from CRAN:
install.packages("phylopairs")

Install from Github:
library("remotes")
install_github("cran/phylopairs")

Install by package version:
library("remotes")
install_version("phylopairs", "0.1.1")



Attach the package and use:
library("phylopairs")
Maintained by
Sean A. S. Anderson
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2024-06-25
Latest Update: 2025-04-23
Description:
Facilitates the testing of causal relationships among lineage-pair traits in a phylogenetically informed context. Lineage-pair traits are characters that are defined for pairs of lineages instead of individual taxa. Examples include the strength of reproductive isolation, range overlap, competition coefficient, diet niche similarity, and relative hybrid fitness. Users supply a lineage-pair dataset and a phylogeny. 'phylopairs' calculates a covariance matrix for the pairwise-defined data and provides built-in models to test for relationships among variables while taking this covariance into account. Bayesian sampling is run through built-in 'Stan' programs via the 'rstan' package. The various models and methods that this package makes available are described in Anderson et al. (In Review), Coyne and Orr (1989) <doi:10.1111/j.1558-5646.1989.tb04233.x>, Fitzpatrick (2002) <doi:10.1111/j.0014-3820.2002.tb00860.x>, and Castillo (2007) <doi:10.1002/ece3.3093>.
How to cite:
Sean A. S. Anderson (2024). phylopairs: Comparative Analyses of Lineage-Pair Traits. R package version 0.1.1, https://cran.r-project.org/web/packages/phylopairs. Accessed 29 Aug. 2026.
Previous versions and publish date:
(2026-07-09 06:41), 0.1.0 (2024-06-25 13:50)
Other packages that cited phylopairs R package
View phylopairs citation profile
Other R packages that phylopairs depends, imports, suggests or enhances
Complete documentation for phylopairs
Functions, R codes and Examples using the phylopairs R package
Full phylopairs package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

r2resize  
In-Text Resize for Images, Tables and Fancy Resize Containers in 'shiny', 'rmarkdown' and 'quarto' Documents
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency  
mob  
Monotonic Optimal Binning
Generate the monotonic binning and perform the woe (weight of evidence) transformation for the logi ...
Download / Learn more Package Citations See dependency  
lordif  
Logistic Ordinal Regression Differential Item Functioning using IRT
Analysis of Differential Item Functioning (DIF) for dichotomous and polytomous items using an itera ...
Download / Learn more Package Citations See dependency  
MMeM  
Multivariate Mixed Effects Model
Analyzing data under multivariate mixed effects model using multivariate REML and multivariate Hende ...
Download / Learn more Package Citations See dependency  
adehabitatHS  
Analysis of Habitat Selection by Animals
A collection of tools for the analysis of habitat selection. ...
Download / Learn more Package Citations See dependency  

28,332

R Packages

239,283

Dependencies

75,283

Author Associations

28,333

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA