Other packages > Find by keyword >

phylopairs  

Comparative Analyses of Lineage-Pair Traits
View on CRAN: Click here


Download and install phylopairs package within the R console
Install from CRAN:
install.packages("phylopairs")

Install from Github:
library("remotes")
install_github("cran/phylopairs")

Install by package version:
library("remotes")
install_version("phylopairs", "0.1.0")



Attach the package and use:
library("phylopairs")
Maintained by
Sean A. S. Anderson
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2024-06-25
Latest Update: 2024-06-25
Description:
Facilitates the testing of causal relationships among lineage-pair traits in a phylogenetically informed context. Lineage-pair traits are characters that are defined for pairs of lineages instead of individual taxa. Examples include the strength of reproductive isolation, range overlap, competition coefficient, diet niche similarity, and relative hybrid fitness. Users supply a lineage-pair dataset and a phylogeny. 'phylopairs' calculates a covariance matrix for the pairwise-defined data and provides built-in models to test for relationships among variables while taking this covariance into account. Bayesian sampling is run through built-in 'Stan' programs via the 'rstan' package. The various models and methods that this package makes available are described in Anderson et al. (In Review), Coyne and Orr (1989) <doi:10.1111/j.1558-5646.1989.tb04233.x>, Fitzpatrick (2002) <doi:10.1111/j.0014-3820.2002.tb00860.x>, and Castillo (2007) <doi:10.1002/ece3.3093>.
How to cite:
Sean A. S. Anderson (2024). phylopairs: Comparative Analyses of Lineage-Pair Traits. R package version 0.1.0, https://cran.r-project.org/web/packages/phylopairs. Accessed 21 Nov. 2024.
Previous versions and publish date:
No previous versions
Other packages that cited phylopairs R package
View phylopairs citation profile
Other R packages that phylopairs depends, imports, suggests or enhances
Complete documentation for phylopairs
Functions, R codes and Examples using the phylopairs R package
Full phylopairs package functions and examples
Downloads during the last 30 days
Get rewarded with contribution points by helping add
Reviews / comments / questions /suggestions ↴↴↴

Today's Hot Picks in Authors and Packages

kgschart  
KGS Rank Graph Parser
Restore underlining numeric data from rating history graph of KGS (an online platform of the game o ...
Download / Learn more Package Citations See dependency  
SCBiclust  
Identifies Mean, Variance, and Hierarchically Clustered Biclusters
Identifies a bicluster, a submatrix of the data such that the features and observations within the s ...
Download / Learn more Package Citations See dependency  
deductive  
Data Correction and Imputation Using Deductive Methods
Attempt to repair inconsistencies and missing values in data records by using information from vali ...
Download / Learn more Package Citations See dependency  
crossrun  
Joint Distribution of Number of Crossings and Longest Run
Joint distribution of number of crossings and the longest run in a series of independent Bernoulli ...
Download / Learn more Package Citations See dependency  
RcppHNSW  
'Rcpp' Bindings for 'hnswlib', a Library for Approximate Nearest Neighbors
'Hnswlib' is a C++ library for Approximate Nearest Neighbors. This package provides a minimal R int ...
Download / Learn more Package Citations See dependency  
pkgdepends  
Package Dependency Resolution and Downloads
Find recursive dependencies of 'R' packages from various sources. Solve the dependencies to obtain ...
Download / Learn more Package Citations See dependency  

23,229

R Packages

199,929

Dependencies

62,984

Author Associations

23,230

Publication Badges

© Copyright 2022 - present. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA