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phylobase  

Base Package for Phylogenetic Structures and Comparative Data
View on CRAN: Click here


Download and install phylobase package within the R console
Install from CRAN:
install.packages("phylobase")

Install from Github:
library("remotes")
install_github("cran/phylobase")

Install by package version:
library("remotes")
install_version("phylobase", "0.8.12")



Attach the package and use:
library("phylobase")
Maintained by
Francois Michonneau
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2009-11-01
Latest Update: 2024-01-30
Description:
Provides a base S4 class for comparative methods, incorporating one or more trees and trait data.
How to cite:
Francois Michonneau (2009). phylobase: Base Package for Phylogenetic Structures and Comparative Data. R package version 0.8.12, https://cran.r-project.org/web/packages/phylobase. Accessed 28 Aug. 2026.
Previous versions and publish date:
(2026-07-09 06:41), 0.5 (2009-11-01 19:04), 0.6.0 (2010-07-24 22:42), 0.6.1 (2010-07-26 11:31), 0.6.2 (2010-12-07 09:20), 0.6.3 (2011-04-01 09:09), 0.6.4 (2012-11-20 08:13), 0.6.5.2 (2013-11-27 12:14), 0.6.5 (2012-11-25 17:00), 0.6.8 (2014-03-20 22:56), 0.8.0 (2015-07-24 19:05), 0.8.2 (2016-01-23 00:32), 0.8.4 (2017-04-22 01:40), 0.8.6 (2019-02-02 17:10), 0.8.8 (2020-02-11 22:40), 0.8.10 (2020-03-01 09:00)
Other packages that cited phylobase R package
View phylobase citation profile
Other R packages that phylobase depends, imports, suggests or enhances
Complete documentation for phylobase
Functions, R codes and Examples using the phylobase R package
Some associated functions: MRCA . addData-methods . ancestors . checkPhylo4 . edgeLength-methods . edges-accessors . extractTree . formatData . geospiza . getNode-methods . labels-methods . multiPhylo-class . nTips-methods . nodeId-methods . owls4 . pdata-class . pdata . phylo4-class . phylo4-methods . phylo4d-accessors . phylo4d-class . phylo4d-methods . phyloXXYY . phylobase-package . phylobase.options . phylobubbles . phylomat-class . plotOneTree . print-methods . readNexus . reorder-methods . root-methods . setAs-methods . shortestPath-methods . subset-methods . summary-methods . tdata-methods . tip.data.plot . treePlot-methods . treeStructure-methods . 
Some associated R codes: MRCA-methods.R . RcppExports.R . addData-methods.R . ancestors.R . checkdata.R . edgeLength-methods.R . extractTree.R . formatData.R . getNode-methods.R . internal-constructors.R . labels-methods.R . multiphylo4-class.R . nodeId-methods.R . oldclasses-class.R . pdata.R . phylo4-accessors.R . phylo4-class.R . phylo4-methods.R . phylo4d-accessors.R . phylo4d-class.R . phylo4d-methods.R . phylobase-package.R . phylobase.options.R . phylomats-class.R . print-methods.R . readNCL.R . reorder-methods.R . root-methods.R . setAs-methods.R . shortestPath-methods.R . subset-methods.R . summary-methods.R . tbind.R . tdata-methods.R . treePlot.R . treestruc.R . zzz.R .  Full phylobase package functions and examples
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