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phyloatlas  

Access to the 'Phylo-Species Atlas' of Empirical Phylogenies
View on CRAN: Click here


Download and install phyloatlas package within the R console
Install from CRAN:
install.packages("phyloatlas")

Install from Github:
library("remotes")
install_github("cran/phyloatlas")

Install by package version:
library("remotes")
install_version("phyloatlas", "0.1.0")



Attach the package and use:
library("phyloatlas")
Maintained by
Francisco Richter
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2026-06-04
Latest Update: 2026-06-04
Description:
Provides convenience functions to fetch standardized phylogenetic trees and per-tree provenance metadata from the 'Phylo-Species Atlas' <https://github.com/franciscorichter/phylo-species-atlas> directly from R. The atlas is a curated collection of empirical species-level trees covering Bacteria, Archaea, and Eukaryota, organized into 62 partitions of life with tip labels normalized against a shared dictionary of standardized species identifiers. Functions load any of the standardized trees with species labels resolved from the dictionary, list available trees, and inspect per-tree provenance.
How to cite:
Francisco Richter (2026). phyloatlas: Access to the 'Phylo-Species Atlas' of Empirical Phylogenies. R package version 0.1.0, https://cran.r-project.org/web/packages/phyloatlas. Accessed 16 Jul. 2026.
Previous versions and publish date:
No previous versions
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Complete documentation for phyloatlas
Functions, R codes and Examples using the phyloatlas R package
Full phyloatlas package functions and examples
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