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phylepic  

Combined Visualisation of Phylogenetic and Epidemiological Data
View on CRAN: Click here


Download and install phylepic package within the R console
Install from CRAN:
install.packages("phylepic")

Install from Github:
library("remotes")
install_github("cran/phylepic")

Install by package version:
library("remotes")
install_version("phylepic", "0.2.0")



Attach the package and use:
library("phylepic")
Maintained by
Carl Suster
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2024-05-31
Latest Update: 2024-05-31
Description:
A collection of utilities and 'ggplot2' extensions to assist with visualisations in genomic epidemiology. This includes the 'phylepic' chart, a visual combination of a phylogenetic tree and a matched epidemic curve. The included 'ggplot2' extensions such as date axes binned by week are relevant for other applications in epidemiology and beyond. The approach is described in Suster et al. (2024) <doi:10.1101/2024.04.02.24305229>.
How to cite:
Carl Suster (2024). phylepic: Combined Visualisation of Phylogenetic and Epidemiological Data. R package version 0.2.0, https://cran.r-project.org/web/packages/phylepic. Accessed 07 Nov. 2024.
Previous versions and publish date:
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Complete documentation for phylepic
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Full phylepic package functions and examples
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