Other packages > Find by keyword >

photosynthesisLRC  

Nonlinear Least Squares Models for Photosynthetic Light Response
View on CRAN: Click here


Download and install photosynthesisLRC package within the R console
Install from CRAN:
install.packages("photosynthesisLRC")

Install from Github:
library("remotes")
install_github("cran/photosynthesisLRC")

Install by package version:
library("remotes")
install_version("photosynthesisLRC", "1.0.6")



Attach the package and use:
library("photosynthesisLRC")
Maintained by
Rebekah Davis
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2025-02-25
Latest Update: 2025-02-25
Description:
Provides functions for modeling, comparing, and visualizing photosynthetic light response curves using established mechanistic and empirical models like the rectangular hyperbola Michaelis-Menton based models ((eq1 (Baly (1935) <doi:10.1098/rspb.1935.0026>)) (eq2 (Kaipiainenn (2009) <doi:10.1134/S1021443709040025>)) (eq3 (Smith (1936) <doi:10.1073/pnas.22.8.504>))), hyperbolic tangent based models ((eq4 (Jassby & Platt (1976) <doi:10.4319/LO.1976.21.4.0540>)) (eq5 (Abe et al. (2009) <doi:10.1111/j.1444-2906.2008.01619.x>))), the non-rectangular hyperbola model (eq6 (Prioul & Chartier (1977) <doi:10.1093/oxfordjournals.aob.a085354>)), exponential based models ((eq8 (Webb et al. (1974) <doi:10.1007/BF00345747>)), (eq9 (Prado & de Moraes (1997) <doi:10.1007/BF02982542>))), and finally the Ye model (eq11 (Ye (2007) <doi:10.1007/s11099-007-0110-5>)). Each of these nonlinear least squares models are commonly used to express photosynthetic response under changing light conditions and has been well supported in the literature, but distinctions in each mathematical model represent moderately different assumptions about physiology and trait relationships which ultimately produce different calculated functional trait values. These models were all thoughtfully discussed and curated by Lobo et al. (2013) <doi:10.1007/s11099-013-0045-y> to express the importance of selecting an appropriate model for analysis, and methods were established in Davis et al. (in review) to evaluate the impact of analytical choice in phylogenetic analysis of the function-valued traits. Gas exchange data on 28 wild sunflower species from Davis et al.are included as an example data set here.
How to cite:
Rebekah Davis (2025). photosynthesisLRC: Nonlinear Least Squares Models for Photosynthetic Light Response. R package version 1.0.6, https://cran.r-project.org/web/packages/photosynthesisLRC. Accessed 08 Jun. 2026.
Previous versions and publish date:
No previous versions
Other packages that cited photosynthesisLRC R package
View photosynthesisLRC citation profile
Other R packages that photosynthesisLRC depends, imports, suggests or enhances
Complete documentation for photosynthesisLRC
Functions, R codes and Examples using the photosynthesisLRC R package
Full photosynthesisLRC package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

FluMoDL  
Influenza-Attributable Mortality with Distributed-Lag Models
Functions to estimate the mortality attributable to influenza and temperature, using distributed-la ...
Download / Learn more Package Citations See dependency  
penppml  
Penalized Poisson Pseudo Maximum Likelihood Regression
A set of tools that enables efficient estimation of penalized Poisson Pseudo Maximum Likelihood reg ...
Download / Learn more Package Citations See dependency  
AdvBinomApps  
Upper Clopper-Pearson Confidence Limits for Burn-in Studies under Additional Available Information
Functions to compute upper Clopper-Pearson confidence limits of early life failure probabilities and ...
Download / Learn more Package Citations See dependency  
nextGenShinyApps  
Craft Exceptional 'R Shiny' Applications and Dashboards with Novel Responsive Tools
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency  
geofacet  
'ggplot2' Faceting Utilities for Geographical Data
Provides geographical faceting functionality for 'ggplot2'. Geographical faceting arranges a sequen ...
Download / Learn more Package Citations See dependency  
ODMeans  
OD-Means: k-Means for Origin-Destination
OD-means is a hierarchical adaptive k-means algorithm based on origin-destination pairs. In the fir ...
Download / Learn more Package Citations See dependency  

27,372

R Packages

233,548

Dependencies

72,820

Author Associations

27,205

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA