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phenology
View on CRAN: Click
here
Download and install phenology package within the R console
Install from CRAN:
install.packages("phenology")
Install from Github:
library("remotes")
install_github("cran/phenology")
Install by package version:
library("remotes")
install_version("phenology", "9.1")
Attach the package and use:
library("phenology")
Maintained by
Marc Girondot
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2012-04-06
Latest Update: 2023-04-01
Description:
Functions used to fit and test the phenology of species based on counts. Based on Girondot, M. (2010) for the phenology function, Girondot, M. (2017) for the convolution of negative binomial, Girondot, M. and Rizzo, A. (2015) for Bayesian estimate, Pfaller JB, ..., Girondot M (2019) for tag-loss estimate, Hancock J, ..., Girondot M (2019) for nesting history, Laloe J-O, ..., Girondot M, Hays GC (2020) for aggregating several seasons.
How to cite:
Marc Girondot (2012). phenology: Tools to Manage a Parametric Function that Describes Phenology and More. R package version 9.1, https://cran.r-project.org/web/packages/phenology
Previous versions and publish date:
3.25 (2012-04-06 11:23), 3.28 (2012-04-08 18:48), 3.29 (2012-04-11 08:03), 3.31 (2012-05-15 08:44), 3.40 (2012-10-07 13:24), 3.41 (2012-11-26 17:08), 3.43 (2013-01-03 08:25), 3.44 (2013-01-29 13:45), 3.47 (2013-06-03 15:21), 3.49 (2013-06-24 02:03), 3.50 (2013-07-10 11:10), 3.51 (2013-07-11 07:19), 3.54 (2013-10-23 18:34), 3.55 (2013-11-21 06:48), 3.57 (2014-02-25 07:44), 3.58 (2014-02-26 18:25), 3.62 (2014-03-15 08:39), 3.63 (2014-04-07 20:15), 3.69 (2014-06-22 12:06), 3.72 (2014-08-25 10:21), 4.0.4 (2015-02-11 00:38), 4.0 (2014-10-06 00:41), 4.1 (2015-04-09 01:18), 4.2.4 (2015-06-30 09:22), 4.2 (2015-05-10 00:05), 5.1 (2016-05-02 15:03), 5.2 (2016-07-18 14:09), 5.3 (2016-10-01 14:58), 5.4 (2017-03-10 11:49), 6.0.3 (2017-11-25 09:07), 6.0 (2017-09-24 22:40), 7.0 (2018-03-14 11:34), 7.1 (2018-07-10 18:40), 7.2 (2018-09-27 14:30), 7.3 (2019-01-04 17:10), 7.6 (2020-10-22 16:20), 7.8 (2022-07-15 15:00), 7.9 (2022-09-06 23:20), 9.0 (2023-04-01 12:10)
Other packages that cited phenology R package
View phenology citation profile
Other R packages that phenology depends,
imports, suggests or enhances
Functions, R codes and Examples using
the phenology R package
Some associated functions: AutoFitPhenology . BE_to_LBLE . Bayesian.remigration . CI.RMU . ECFOCF_f . ECFOCF_full . ExponentialRegression . Gratiot . IPFit . IPModel . IPPredict . LBLE_to_BE . LBLE_to_L . L_to_LBLE . LnRI_norm . MarineTurtles_2002 . MinBMinE_to_Min . Parameter_Global_Year . RI . TableECFOCF . Tagloss_L . Tagloss_LengthObs . Tagloss_cumul . Tagloss_daymax . Tagloss_fit . Tagloss_format . Tagloss_mcmc . Tagloss_mcmc_p . Tagloss_model . Tagloss_simulate . adapt_parameters . add_SE . add_phenology . extract_result . fitCF . fitCF_MHmcmc . fitCF_MHmcmc_p . fitRMU . fitRMU_MHmcmc . fitRMU_MHmcmc_p . fit_phenology . fixed.parameters0 . generateCF . likelihood_phenology . lnLCF . logLik.ECFOCF . logLik.Tagloss . logLik.fitRMU . logLik.phenology . map_Gratiot . map_phenology . o_4p_p1p2 . outLR . par_init . phenology-package . phenology . phenology2fitRMU . phenology_MHmcmc . phenology_MHmcmc_p . plot.ECFOCF . plot.IP . plot.Remigration . plot.TableECFOCF . plot.Tagloss . plot.TaglossData . plot.fitRMU . plot.phenology . plot.phenologymap . plot_delta . plot_phi . print.phenology . print.phenologymap . print.phenologyout . remove_site . result_Gratiot . result_Gratiot1 . result_Gratiot2 . result_Gratiot_Flat . result_Gratiot_mcmc . shift_sinusoid . summary.IP . summary.phenology . summary.phenologymap . summary.phenologyout . toggle_Min_PMin .
Some associated R codes: AutoFitPhenology.R . BE_to_LBLE.R . Bayesian.remigration.R . CI.RMU.R . ECFOCF_f.R . ECFOCF_full.R . ExponentialRegression.R . Gratiot.R . IPFit.R . IPModel.R . IPPredict.R . IPlnL.R . LBLE_to_BE.R . LBLE_to_L.R . L_to_LBLE.R . LikelihoodRMU.R . Likelihood_phenology.R . Lnegbin.R . MarineTurtles_2002.R . MinBMinE_to_Min.R . Parameter_Global_Year.R . RI.R . TableECFOCF.R . Tagloss_L.R . Tagloss_LengthObs.R . Tagloss_Lind.R . Tagloss_cumul.R . Tagloss_daymax.R . Tagloss_fit.R . Tagloss_format.R . Tagloss_mcmc.R . Tagloss_mcmc_p.R . Tagloss_model.R . Tagloss_simulate.R . adapt_parameters.R . add_SE.R . add_phenology.R . daily_count.R . extract_result.R . fitCF.R . fitCF_MHmcmc.R . fitCF_MHmcmc_p.R . fitRMU.R . fitRMU_MHmcmc.R . fitRMU_MHmcmc_p.R . fit_phenology.R . fixed.parameters0.R . format_par.R . generateCF.R . lnLCF.R . lnRI_norm.R . logLik.ECFOCF.R . logLik.Tagloss.R . logLik.fitRMU.R . logLik.phenology.R . map_Gratiot.R . map_phenology.R . o_4p_p1p2.R . onAttach.R . outLR.R . par_init.R . phenology-package.R . phenology.R . phenology2fitRMU.R . phenology_MHmcmc.R . phenology_MHmcmc_p.R . plot.ECFOCF.R . plot.IP.R . plot.Remigration.R . plot.TableECFOCF.R . plot.Tagloss.R . plot.TaglossData.R . plot.fitRMU.R . plot.phenology.R . plot.phenologymap.R . plot_delta.R . plot_phi.R . print.phenology.R . print.phenologymap.R . print.phenologyout.R . remove_site.R . repeat_last.R . result_Gratiot.R . result_Gratiot1.R . result_Gratiot2.R . result_Gratiot_Flat.R . result_Gratiot_mcmc.R . shift_sinusoid.R . summary.IP.R . summary.phenology.R . summary.phenologymap.R . summary.phenologyout.R . toggle_Min_PMin.R . Full phenology package functions and examples
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