Other packages > Find by keyword >

phenology  

Tools to Manage a Parametric Function that Describes Phenology and More
View on CRAN: Click here


Download and install phenology package within the R console
Install from CRAN:
install.packages("phenology")

Install from Github:
library("remotes")
install_github("cran/phenology")

Install by package version:
library("remotes")
install_version("phenology", "10.1")



Attach the package and use:
library("phenology")
Maintained by
Marc Girondot
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2012-04-06
Latest Update: 2023-04-01
Description:
Functions used to fit and test the phenology of species based on counts. Based on Girondot, M. (2010) for the phenology function, Girondot, M. (2017) for the convolution of negative binomial, Girondot, M. and Rizzo, A. (2015) for Bayesian estimate, Pfaller JB, ..., Girondot M (2019) for tag-loss estimate, Hancock J, ..., Girondot M (2019) for nesting history, Laloe J-O, ..., Girondot M, Hays GC (2020) for aggregating several seasons.
How to cite:
Marc Girondot (2012). phenology: Tools to Manage a Parametric Function that Describes Phenology and More. R package version 10.1, https://cran.r-project.org/web/packages/phenology. Accessed 05 Jan. 2025.
Previous versions and publish date:
3.25 (2012-04-06 11:23), 3.28 (2012-04-08 18:48), 3.29 (2012-04-11 08:03), 3.31 (2012-05-15 08:44), 3.40 (2012-10-07 13:24), 3.41 (2012-11-26 17:08), 3.43 (2013-01-03 08:25), 3.44 (2013-01-29 13:45), 3.47 (2013-06-03 15:21), 3.49 (2013-06-24 02:03), 3.50 (2013-07-10 11:10), 3.51 (2013-07-11 07:19), 3.54 (2013-10-23 18:34), 3.55 (2013-11-21 06:48), 3.57 (2014-02-25 07:44), 3.58 (2014-02-26 18:25), 3.62 (2014-03-15 08:39), 3.63 (2014-04-07 20:15), 3.69 (2014-06-22 12:06), 3.72 (2014-08-25 10:21), 4.0.4 (2015-02-11 00:38), 4.0 (2014-10-06 00:41), 4.1 (2015-04-09 01:18), 4.2.4 (2015-06-30 09:22), 4.2 (2015-05-10 00:05), 5.1 (2016-05-02 15:03), 5.2 (2016-07-18 14:09), 5.3 (2016-10-01 14:58), 5.4 (2017-03-10 11:49), 6.0.3 (2017-11-25 09:07), 6.0 (2017-09-24 22:40), 7.0 (2018-03-14 11:34), 7.1 (2018-07-10 18:40), 7.2 (2018-09-27 14:30), 7.3 (2019-01-04 17:10), 7.6 (2020-10-22 16:20), 7.8 (2022-07-15 15:00), 7.9 (2022-09-06 23:20), 9.0 (2023-04-01 12:10), 9.1 (2023-10-16 10:20)
Other packages that cited phenology R package
View phenology citation profile
Other R packages that phenology depends, imports, suggests or enhances
Complete documentation for phenology
Functions, R codes and Examples using the phenology R package
Some associated functions: AutoFitPhenology . BE_to_LBLE . Bayesian.remigration . CI.RMU . ECFOCF_f . ECFOCF_full . ExponentialRegression . Gratiot . IPFit . IPModel . IPPredict . LBLE_to_BE . LBLE_to_L . L_to_LBLE . LnRI_norm . MarineTurtles_2002 . MinBMinE_to_Min . Parameter_Global_Year . RI . TableECFOCF . Tagloss_L . Tagloss_LengthObs . Tagloss_cumul . Tagloss_daymax . Tagloss_fit . Tagloss_format . Tagloss_mcmc . Tagloss_mcmc_p . Tagloss_model . Tagloss_simulate . adapt_parameters . add_SE . add_phenology . extract_result . fitCF . fitCF_MHmcmc . fitCF_MHmcmc_p . fitRMU . fitRMU_MHmcmc . fitRMU_MHmcmc_p . fit_phenology . fixed.parameters0 . generateCF . likelihood_phenology . lnLCF . logLik.ECFOCF . logLik.Tagloss . logLik.fitRMU . logLik.phenology . map_Gratiot . map_phenology . o_4p_p1p2 . outLR . par_init . phenology-package . phenology . phenology2fitRMU . phenology_MHmcmc . phenology_MHmcmc_p . plot.ECFOCF . plot.IP . plot.Remigration . plot.TableECFOCF . plot.Tagloss . plot.TaglossData . plot.fitRMU . plot.phenology . plot.phenologymap . plot_delta . plot_phi . print.phenology . print.phenologymap . print.phenologyout . remove_site . result_Gratiot . result_Gratiot1 . result_Gratiot2 . result_Gratiot_Flat . result_Gratiot_mcmc . shift_sinusoid . summary.IP . summary.phenology . summary.phenologymap . summary.phenologyout . toggle_Min_PMin . 
Some associated R codes: AutoFitPhenology.R . BE_to_LBLE.R . Bayesian.remigration.R . CI.RMU.R . ECFOCF_f.R . ECFOCF_full.R . ExponentialRegression.R . Gratiot.R . IPFit.R . IPModel.R . IPPredict.R . IPlnL.R . LBLE_to_BE.R . LBLE_to_L.R . L_to_LBLE.R . LikelihoodRMU.R . Likelihood_phenology.R . Lnegbin.R . MarineTurtles_2002.R . MinBMinE_to_Min.R . Parameter_Global_Year.R . RI.R . TableECFOCF.R . Tagloss_L.R . Tagloss_LengthObs.R . Tagloss_Lind.R . Tagloss_cumul.R . Tagloss_daymax.R . Tagloss_fit.R . Tagloss_format.R . Tagloss_mcmc.R . Tagloss_mcmc_p.R . Tagloss_model.R . Tagloss_simulate.R . adapt_parameters.R . add_SE.R . add_phenology.R . daily_count.R . extract_result.R . fitCF.R . fitCF_MHmcmc.R . fitCF_MHmcmc_p.R . fitRMU.R . fitRMU_MHmcmc.R . fitRMU_MHmcmc_p.R . fit_phenology.R . fixed.parameters0.R . format_par.R . generateCF.R . lnLCF.R . lnRI_norm.R . logLik.ECFOCF.R . logLik.Tagloss.R . logLik.fitRMU.R . logLik.phenology.R . map_Gratiot.R . map_phenology.R . o_4p_p1p2.R . onAttach.R . outLR.R . par_init.R . phenology-package.R . phenology.R . phenology2fitRMU.R . phenology_MHmcmc.R . phenology_MHmcmc_p.R . plot.ECFOCF.R . plot.IP.R . plot.Remigration.R . plot.TableECFOCF.R . plot.Tagloss.R . plot.TaglossData.R . plot.fitRMU.R . plot.phenology.R . plot.phenologymap.R . plot_delta.R . plot_phi.R . print.phenology.R . print.phenologymap.R . print.phenologyout.R . remove_site.R . repeat_last.R . result_Gratiot.R . result_Gratiot1.R . result_Gratiot2.R . result_Gratiot_Flat.R . result_Gratiot_mcmc.R . shift_sinusoid.R . summary.IP.R . summary.phenology.R . summary.phenologymap.R . summary.phenologyout.R . toggle_Min_PMin.R .  Full phenology package functions and examples
Downloads during the last 30 days
Get rewarded with contribution points by helping add
Reviews / comments / questions /suggestions ↴↴↴

Today's Hot Picks in Authors and Packages

bama  
High Dimensional Bayesian Mediation Analysis
Perform mediation analysis in the presence of high-dimensional mediators based on the potential out ...
Download / Learn more Package Citations See dependency  
uclust  
Clustering and Classification Inference with U-Statistics
Clustering and classification inference for high dimension low sample size (HDLSS) data with U-stati ...
Download / Learn more Package Citations See dependency  
ENMeval  
Automated Tuning and Evaluations of Ecological Niche Models
Runs ecological niche models over all combinations of user-defined settings (i.e., tuning), performs ...
Download / Learn more Package Citations See dependency  
GFisher  
Generalized Fisher's Combination Tests Under Dependence
Accurate and computationally efficient p-value calculation methods for a general family of Fisher ty ...
Download / Learn more Package Citations See dependency  
quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  
interplot  
Plot the Effects of Variables in Interaction Terms
Plots the conditional coefficients ("marginal effects") of variables included in multiplicative int ...
Download / Learn more Package Citations See dependency  
Maintainer: Yue Hu (view profile)

23,440

R Packages

202,297

Dependencies

63,567

Author Associations

23,434

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA