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phenology  

Tools to Manage a Parametric Function that Describes Phenology and More
View on CRAN: Click here


Download and install phenology package within the R console
Install from CRAN:
install.packages("phenology")

Install from Github:
library("remotes")
install_github("cran/phenology")

Install by package version:
library("remotes")
install_version("phenology", "2025.11.12")



Attach the package and use:
library("phenology")
Maintained by
Marc Girondot
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2012-04-06
Latest Update: 2025-06-17
Description:
Functions used to fit and test the phenology of species based on counts. Based on Girondot, M. (2010) for the phenology function, Girondot, M. (2017) for the convolution of negative binomial, Girondot, M. and Rizzo, A. (2015) for Bayesian estimate, Pfaller JB, ..., Girondot M (2019) for tag-loss estimate, Hancock J, ..., Girondot M (2019) for nesting history, Laloe J-O, ..., Girondot M, Hays GC (2020) for aggregating several seasons.
How to cite:
Marc Girondot (2012). phenology: Tools to Manage a Parametric Function that Describes Phenology and More. R package version 2025.11.12, https://cran.r-project.org/web/packages/phenology. Accessed 10 Mar. 2026.
Previous versions and publish date:
3.25 (2012-04-06 11:23), 3.28 (2012-04-08 18:48), 3.29 (2012-04-11 08:03), 3.31 (2012-05-15 08:44), 3.40 (2012-10-07 13:24), 3.41 (2012-11-26 17:08), 3.43 (2013-01-03 08:25), 3.44 (2013-01-29 13:45), 3.47 (2013-06-03 15:21), 3.49 (2013-06-24 02:03), 3.50 (2013-07-10 11:10), 3.51 (2013-07-11 07:19), 3.54 (2013-10-23 18:34), 3.55 (2013-11-21 06:48), 3.57 (2014-02-25 07:44), 3.58 (2014-02-26 18:25), 3.62 (2014-03-15 08:39), 3.63 (2014-04-07 20:15), 3.69 (2014-06-22 12:06), 3.72 (2014-08-25 10:21), 4.0.4 (2015-02-11 00:38), 4.0 (2014-10-06 00:41), 4.1 (2015-04-09 01:18), 4.2.4 (2015-06-30 09:22), 4.2 (2015-05-10 00:05), 5.1 (2016-05-02 15:03), 5.2 (2016-07-18 14:09), 5.3 (2016-10-01 14:58), 5.4 (2017-03-10 11:49), 6.0.3 (2017-11-25 09:07), 6.0 (2017-09-24 22:40), 7.0 (2018-03-14 11:34), 7.1 (2018-07-10 18:40), 7.2 (2018-09-27 14:30), 7.3 (2019-01-04 17:10), 7.6 (2020-10-22 16:20), 7.8 (2022-07-15 15:00), 7.9 (2022-09-06 23:20), 9.0 (2023-04-01 12:10), 9.1 (2023-10-16 10:20), 10.1 (2024-08-23 09:40), 10.3 (2025-06-17 11:00), 2025.11.12 (2025-11-12 19:00)
Other packages that cited phenology R package
View phenology citation profile
Other R packages that phenology depends, imports, suggests or enhances
Complete documentation for phenology
Functions, R codes and Examples using the phenology R package
Some associated functions: AutoFitPhenology . BE_to_LBLE . Bayesian.remigration . CI.RMU . ECFOCF_f . ECFOCF_full . ExponentialRegression . Gratiot . IPFit . IPModel . IPPredict . LBLE_to_BE . LBLE_to_L . L_to_LBLE . LnRI_norm . MarineTurtles_2002 . MinBMinE_to_Min . Parameter_Global_Year . RI . TableECFOCF . Tagloss_L . Tagloss_LengthObs . Tagloss_cumul . Tagloss_daymax . Tagloss_fit . Tagloss_format . Tagloss_mcmc . Tagloss_mcmc_p . Tagloss_model . Tagloss_simulate . adapt_parameters . add_SE . add_phenology . extract_result . fitCF . fitCF_MHmcmc . fitCF_MHmcmc_p . fitRMU . fitRMU_MHmcmc . fitRMU_MHmcmc_p . fit_phenology . fixed.parameters0 . generateCF . likelihood_phenology . lnLCF . logLik.ECFOCF . logLik.Tagloss . logLik.fitRMU . logLik.phenology . map_Gratiot . map_phenology . o_4p_p1p2 . outLR . par_init . phenology-package . phenology . phenology2fitRMU . phenology_MHmcmc . phenology_MHmcmc_p . plot.ECFOCF . plot.IP . plot.Remigration . plot.TableECFOCF . plot.Tagloss . plot.TaglossData . plot.fitRMU . plot.phenology . plot.phenologymap . plot_delta . plot_phi . print.phenology . print.phenologymap . print.phenologyout . remove_site . result_Gratiot . result_Gratiot1 . result_Gratiot2 . result_Gratiot_Flat . result_Gratiot_mcmc . shift_sinusoid . summary.IP . summary.phenology . summary.phenologymap . summary.phenologyout . toggle_Min_PMin . 
Some associated R codes: AutoFitPhenology.R . BE_to_LBLE.R . Bayesian.remigration.R . CI.RMU.R . ECFOCF_f.R . ECFOCF_full.R . ExponentialRegression.R . Gratiot.R . IPFit.R . IPModel.R . IPPredict.R . IPlnL.R . LBLE_to_BE.R . LBLE_to_L.R . L_to_LBLE.R . LikelihoodRMU.R . Likelihood_phenology.R . Lnegbin.R . MarineTurtles_2002.R . MinBMinE_to_Min.R . Parameter_Global_Year.R . RI.R . TableECFOCF.R . Tagloss_L.R . Tagloss_LengthObs.R . Tagloss_Lind.R . Tagloss_cumul.R . Tagloss_daymax.R . Tagloss_fit.R . Tagloss_format.R . Tagloss_mcmc.R . Tagloss_mcmc_p.R . Tagloss_model.R . Tagloss_simulate.R . adapt_parameters.R . add_SE.R . add_phenology.R . daily_count.R . extract_result.R . fitCF.R . fitCF_MHmcmc.R . fitCF_MHmcmc_p.R . fitRMU.R . fitRMU_MHmcmc.R . fitRMU_MHmcmc_p.R . fit_phenology.R . fixed.parameters0.R . format_par.R . generateCF.R . lnLCF.R . lnRI_norm.R . logLik.ECFOCF.R . logLik.Tagloss.R . logLik.fitRMU.R . logLik.phenology.R . map_Gratiot.R . map_phenology.R . o_4p_p1p2.R . onAttach.R . outLR.R . par_init.R . phenology-package.R . phenology.R . phenology2fitRMU.R . phenology_MHmcmc.R . phenology_MHmcmc_p.R . plot.ECFOCF.R . plot.IP.R . plot.Remigration.R . plot.TableECFOCF.R . plot.Tagloss.R . plot.TaglossData.R . plot.fitRMU.R . plot.phenology.R . plot.phenologymap.R . plot_delta.R . plot_phi.R . print.phenology.R . print.phenologymap.R . print.phenologyout.R . remove_site.R . repeat_last.R . result_Gratiot.R . result_Gratiot1.R . result_Gratiot2.R . result_Gratiot_Flat.R . result_Gratiot_mcmc.R . shift_sinusoid.R . summary.IP.R . summary.phenology.R . summary.phenologymap.R . summary.phenologyout.R . toggle_Min_PMin.R .  Full phenology package functions and examples
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