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phateR  

PHATE - Potential of Heat-Diffusion for Affinity-Based Transition Embedding
View on CRAN: Click here


Download and install phateR package within the R console
Install from CRAN:
install.packages("phateR")

Install from Github:
library("remotes")
install_github("cran/phateR")

Install by package version:
library("remotes")
install_version("phateR", "1.0.7")



Attach the package and use:
library("phateR")
Maintained by
Scott Gigante
[Scholar Profile | Author Map]
First Published: 2018-05-27
Latest Update: 2021-02-12
Description:
PHATE is a tool for visualizing high dimensional single-cell data with natural progressions or trajectories. PHATE uses a novel conceptual framework for learning and visualizing the manifold inherent to biological systems in which smooth transitions mark the progressions of cells from one state to another. To see how PHATE can be applied to single-cell RNA-seq datasets from hematopoietic stem cells, human embryonic stem cells, and bone marrow samples, check out our publication in Nature Biotechnology at .
How to cite:
Scott Gigante (2018). phateR: PHATE - Potential of Heat-Diffusion for Affinity-Based Transition Embedding. R package version 1.0.7, https://cran.r-project.org/web/packages/phateR. Accessed 31 Mar. 2025.
Previous versions and publish date:
0.2.6 (2018-05-27 15:56), 0.2.7 (2018-06-01 15:13), 0.2.8 (2018-07-03 21:20), 0.2.9 (2018-09-11 07:30), 0.4.0 (2019-04-13 06:22), 0.4.1 (2019-04-26 19:20), 1.0.0 (2019-12-05 20:00), 1.0.4 (2020-05-22 06:40)
Other packages that cited phateR R package
View phateR citation profile
Other R packages that phateR depends, imports, suggests or enhances
Complete documentation for phateR
Functions, R codes and Examples using the phateR R package
Some associated functions: as.data.frame . as.matrix . check_pyphate_version . cluster_phate . ggplot . install.phate . library.size.normalize . phate . plot . print . summary . tree.data . tree.data.small . 
Some associated R codes: cluster.R . phate.R . preprocessing.R . tree.data.R . utils.R .  Full phateR package functions and examples
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