Other packages > Find by keyword >

phateR  

PHATE - Potential of Heat-Diffusion for Affinity-Based Transition Embedding
View on CRAN: Click here


Download and install phateR package within the R console
Install from CRAN:
install.packages("phateR")

Install from Github:
library("remotes")
install_github("cran/phateR")

Install by package version:
library("remotes")
install_version("phateR", "1.0.7")



Attach the package and use:
library("phateR")
Maintained by
Scott Gigante
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2018-05-27
Latest Update: 2021-02-12
Description:
PHATE is a tool for visualizing high dimensional single-cell data with natural progressions or trajectories. PHATE uses a novel conceptual framework for learning and visualizing the manifold inherent to biological systems in which smooth transitions mark the progressions of cells from one state to another. To see how PHATE can be applied to single-cell RNA-seq datasets from hematopoietic stem cells, human embryonic stem cells, and bone marrow samples, check out our publication in Nature Biotechnology at .
How to cite:
Scott Gigante (2018). phateR: PHATE - Potential of Heat-Diffusion for Affinity-Based Transition Embedding. R package version 1.0.7, https://cran.r-project.org/web/packages/phateR. Accessed 17 Jul. 2026.
Previous versions and publish date:
(2026-07-09 06:41), 0.2.6 (2018-05-27 15:56), 0.2.7 (2018-06-01 15:13), 0.2.8 (2018-07-03 21:20), 0.2.9 (2018-09-11 07:30), 0.4.0 (2019-04-13 06:22), 0.4.1 (2019-04-26 19:20), 1.0.0 (2019-12-05 20:00), 1.0.4 (2020-05-22 06:40)
Other packages that cited phateR R package
View phateR citation profile
Other R packages that phateR depends, imports, suggests or enhances
Complete documentation for phateR
Functions, R codes and Examples using the phateR R package
Some associated functions: as.data.frame . as.matrix . check_pyphate_version . cluster_phate . ggplot . install.phate . library.size.normalize . phate . plot . print . summary . tree.data . tree.data.small . 
Some associated R codes: cluster.R . phate.R . preprocessing.R . tree.data.R . utils.R .  Full phateR package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

VEwaningVariant  
Vaccine Efficacy Over Time - Variant Aware
Implements methods for inference on potential waning of vaccine efficacy and for estimation of vacci ...
Download / Learn more Package Citations See dependency  
rt.test  
Robustified t-Test
Performs one-sample t-test based on robustified statistics using median/MAD (TA) and Hodges-Lehmann/ ...
Download / Learn more Package Citations See dependency  
alabama  
Constrained Nonlinear Optimization
Augmented Lagrangian Adaptive Barrier Minimization Algorithm for optimizing smooth nonlinear object ...
Download / Learn more Package Citations See dependency  
VFS  
Vegetated Filter Strip and Erosion Model
Empirical models for runoff, erosion, and phosphorus loss across a vegetated filter strip, given sl ...
Download / Learn more Package Citations See dependency  
FastKNN  
Fast k-Nearest Neighbors
Compute labels for a test set according to the k-Nearest Neighbors classification. This is a fast wa ...
Download / Learn more Package Citations See dependency  
r2resize  
In-Text Resize for Images, Tables and Fancy Resize Containers in 'shiny', 'rmarkdown' and 'quarto' Documents
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency  

27,806

R Packages

239,283

Dependencies

73,837

Author Associations

27,807

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA