Other packages > Find by keyword >

phateR  

PHATE - Potential of Heat-Diffusion for Affinity-Based Transition Embedding
View on CRAN: Click here


Download and install phateR package within the R console
Install from CRAN:
install.packages("phateR")

Install from Github:
library("remotes")
install_github("cran/phateR")

Install by package version:
library("remotes")
install_version("phateR", "1.0.7")



Attach the package and use:
library("phateR")
Maintained by
Scott Gigante
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2018-05-27
Latest Update: 2021-02-12
Description:
PHATE is a tool for visualizing high dimensional single-cell data with natural progressions or trajectories. PHATE uses a novel conceptual framework for learning and visualizing the manifold inherent to biological systems in which smooth transitions mark the progressions of cells from one state to another. To see how PHATE can be applied to single-cell RNA-seq datasets from hematopoietic stem cells, human embryonic stem cells, and bone marrow samples, check out our publication in Nature Biotechnology at .
How to cite:
Scott Gigante (2018). phateR: PHATE - Potential of Heat-Diffusion for Affinity-Based Transition Embedding. R package version 1.0.7, https://cran.r-project.org/web/packages/phateR. Accessed 27 Jan. 2025.
Previous versions and publish date:
0.2.6 (2018-05-27 15:56), 0.2.7 (2018-06-01 15:13), 0.2.8 (2018-07-03 21:20), 0.2.9 (2018-09-11 07:30), 0.4.0 (2019-04-13 06:22), 0.4.1 (2019-04-26 19:20), 1.0.0 (2019-12-05 20:00), 1.0.4 (2020-05-22 06:40)
Other packages that cited phateR R package
View phateR citation profile
Other R packages that phateR depends, imports, suggests or enhances
Complete documentation for phateR
Functions, R codes and Examples using the phateR R package
Some associated functions: as.data.frame . as.matrix . check_pyphate_version . cluster_phate . ggplot . install.phate . library.size.normalize . phate . plot . print . summary . tree.data . tree.data.small . 
Some associated R codes: cluster.R . phate.R . preprocessing.R . tree.data.R . utils.R .  Full phateR package functions and examples
Downloads during the last 30 days
Get rewarded with contribution points by helping add
Reviews / comments / questions /suggestions ↴↴↴

Today's Hot Picks in Authors and Packages

quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  
intccr  
Semiparametric Competing Risks Regression under Interval Censoring
Semiparametric regression models on the cumulative incidence function for interval-censored competin ...
Download / Learn more Package Citations See dependency  
mgm  
Estimating Time-Varying k-Order Mixed Graphical Models
Estimation of k-Order time-varying Mixed Graphical Models and mixed VAR(p) models via elastic-net re ...
Download / Learn more Package Citations See dependency  
shinybrms  
Graphical User Interface ('shiny' App) for 'brms'
A graphical user interface (GUI) for fitting Bayesian regression models using the package 'brms' wh ...
Download / Learn more Package Citations See dependency  
AssetCorr  
Estimating Asset Correlations from Default Data
Functions for the estimation of intra- and inter-cohort correlations in the Vasicek credit portfolio ...
Download / Learn more Package Citations See dependency  

23,580

R Packages

204,057

Dependencies

63,980

Author Associations

23,561

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA