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phase  

Analyse Biological Time-Series Data
View on CRAN: Click here


Download and install phase package within the R console
Install from CRAN:
install.packages("phase")

Install from Github:
library("remotes")
install_github("cran/phase")

Install by package version:
library("remotes")
install_version("phase", "1.2.9")



Attach the package and use:
library("phase")
Maintained by
Lakshman Abhilash
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2021-07-02
Latest Update: 2023-03-09
Description:
Compiles functions to trim, bin, visualise, and analyse activity/sleep time-series data collected from the Drosophila Activity Monitor (DAM) system (Trikinetics, USA). The following methods were used to compute periodograms - Chi-square periodogram: Sokolove and Bushell (1978) , Lomb-Scargle periodogram: Lomb (1976) , Scargle (1982) and Ruf (1999) , and Autocorrelation: Eijzenbach et al. (1986) . Identification of activity peaks is done after using a Savitzky-Golay filter (Savitzky and Golay (1964) ) to smooth raw activity data. Three methods to estimate anticipation of activity are used based on the following papers - Slope method: Fernandez et al. (2020) , Harrisingh method: Harrisingh et al. (2007) , and Stoleru method: Stoleru et al. (2004) . Rose plots and circular analysis are based on methods from - Batschelet (1981) and Zar (2010) .
How to cite:
Lakshman Abhilash (2021). phase: Analyse Biological Time-Series Data. R package version 1.2.9, https://cran.r-project.org/web/packages/phase. Accessed 10 Mar. 2026.
Previous versions and publish date:
1.1.1 (2021-07-02 09:10), 1.1.2 (2021-07-17 07:00), 1.1.3 (2021-08-06 18:30), 1.2.1 (2021-08-16 21:30), 1.2.2 (2022-09-25 16:40), 1.2.3 (2022-10-13 10:20), 1.2.5 (2022-10-26 23:52), 1.2.6 (2022-11-05 14:50), 1.2.7 (2022-11-15 23:00), 1.2.8 (2023-03-08 15:30)
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Complete documentation for phase
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