Other packages > Find by keyword >

phase  

Analyse Biological Time-Series Data
View on CRAN: Click here


Download and install phase package within the R console
Install from CRAN:
install.packages("phase")

Install from Github:
library("remotes")
install_github("cran/phase")

Install by package version:
library("remotes")
install_version("phase", "1.2.9")



Attach the package and use:
library("phase")
Maintained by
Lakshman Abhilash
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2021-07-02
Latest Update: 2023-03-09
Description:
Compiles functions to trim, bin, visualise, and analyse activity/sleep time-series data collected from the Drosophila Activity Monitor (DAM) system (Trikinetics, USA). The following methods were used to compute periodograms - Chi-square periodogram: Sokolove and Bushell (1978) , Lomb-Scargle periodogram: Lomb (1976) , Scargle (1982) and Ruf (1999) , and Autocorrelation: Eijzenbach et al. (1986) . Identification of activity peaks is done after using a Savitzky-Golay filter (Savitzky and Golay (1964) ) to smooth raw activity data. Three methods to estimate anticipation of activity are used based on the following papers - Slope method: Fernandez et al. (2020) , Harrisingh method: Harrisingh et al. (2007) , and Stoleru method: Stoleru et al. (2004) . Rose plots and circular analysis are based on methods from - Batschelet (1981) and Zar (2010) .
How to cite:
Lakshman Abhilash (2021). phase: Analyse Biological Time-Series Data. R package version 1.2.9, https://cran.r-project.org/web/packages/phase. Accessed 29 Jan. 2025.
Previous versions and publish date:
1.1.1 (2021-07-02 09:10), 1.1.2 (2021-07-17 07:00), 1.1.3 (2021-08-06 18:30), 1.2.1 (2021-08-16 21:30), 1.2.2 (2022-09-25 16:40), 1.2.3 (2022-10-13 10:20), 1.2.5 (2022-10-26 23:52), 1.2.6 (2022-11-05 14:50), 1.2.7 (2022-11-15 23:00), 1.2.8 (2023-03-08 15:30)
Other packages that cited phase R package
View phase citation profile
Other R packages that phase depends, imports, suggests or enhances
Complete documentation for phase
Downloads during the last 30 days
Get rewarded with contribution points by helping add
Reviews / comments / questions /suggestions ↴↴↴

Today's Hot Picks in Authors and Packages

lassoshooting  
L1 Regularized Regression (Lasso) Solver using the Cyclic Coordinate Descent Algorithm aka Lasso Shooting
L1 regularized regression (Lasso) solver using the Cyclic Coordinate Descent algorithm aka Lasso Sh ...
Download / Learn more Package Citations See dependency  
munfold  
Metric Unfolding
Multidimensional unfolding using Schoenemann's algorithm for metric and Procrustes rotation of unfo ...
Download / Learn more Package Citations See dependency  
r2resize  
In-Text Resize for Images, Tables and Fancy Resize Containers in 'shiny', 'rmarkdown' and 'quarto' Documents
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency  
InSilicoVA  
Probabilistic Verbal Autopsy Coding with 'InSilicoVA' Algorithm
Computes individual causes of death and population cause-specific mortality fractions using the 'InS ...
Download / Learn more Package Citations See dependency  
rstac  
Client Library for SpatioTemporal Asset Catalog
Provides functions to access, search and download spacetime earth observation data via SpatioTempor ...
Download / Learn more Package Citations See dependency  

23,580

R Packages

204,057

Dependencies

63,980

Author Associations

23,581

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA