R package citation, R package reverse dependencies, R package scholars, install an r package from GitHub hy is package acceptance pending why is package undeliverable amazon why is package on hold dhl tour packages why in r package r and r package full form why is r free why r is bad which r package to install which r package has which r package which r package version which r package readxl which r package ggplot which r package fread which r package license where is package.json where is package-lock.json where is package.swift where is package explorer in eclipse where is package where is package manager unity where is package installer android where is package manager console in visual studio who r package which r package to install which r package version who is package who is package deal who is package design r and r package full form r and r package meaning what r package has what package r what is package in java what is package what is package-lock.json what is package in python what is package.json what is package installer do r package can't install r packages r can't find package r can't load package can't load xlsx package r can't install psych package r can't install sf package r Write if else in NONMEM pk pd
phangorn
Phylogenetic Reconstruction and Analysis
View on CRAN: Click
here
Download and install phangorn package within the R console
Install from CRAN:
install.packages("phangorn")
Install from Github:
library("remotes")
install_github("cran/phangorn") Install by package version:
library("remotes")
install_version("phangorn", "2.12.1") Attach the package and use:
library("phangorn")
Maintained by
Klaus Schliep
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
10.32614/CRAN.package.phangorn . https://github.com/KlausVigo/phangorn/issues . https://github.com/KlausVigo/phangorn . https://klausvigo.github.io/phangorn/ . phangorn citation info . phangorn results . phangorn.pdf . Estimating phylogenetic trees with phangorn . phangorn_2.12.1.tar.gz . phangorn_2.12.1.zip . phangorn_2.12.1.zip . phangorn_2.12.1.zip . phangorn_2.12.1.tgz . phangorn_2.12.1.tgz . phangorn_2.12.1.tgz . phangorn_2.12.1.tgz . phangorn archive . https://CRAN.R-project.org/package=phangorn .
First Published: 2008-03-25
Latest Update: 2023-01-23
Description:
Allows for estimation of phylogenetic trees and networks
using Maximum Likelihood, Maximum Parsimony, distance methods and
Hadamard conjugation (Schliep 2011). Offers methods for tree comparison,
model selection and visualization of phylogenetic networks as described in
Schliep et al. (2017).
How to cite:
Klaus Schliep (2008). phangorn: Phylogenetic Reconstruction and Analysis. R package version 2.12.1, https://cran.r-project.org/web/packages/phangorn. Accessed 09 May. 2025.
Previous versions and publish date:
0.0-1 (2008-03-25 10:05), 0.0-2 (2008-07-20 18:08), 0.0-3 (2008-10-28 13:58), 0.0-4 (2008-12-22 09:06), 0.0-5 (2009-01-22 09:36), 0.99-2 (2009-07-21 14:29), 0.99-3 (2009-10-30 18:32), 0.99-4 (2009-11-27 19:19), 0.99-5 (2010-01-15 20:57), 0.99-6 (2010-01-27 12:10), 1.0-0 (2010-03-18 20:16), 1.0-1 (2010-04-15 16:57), 1.0-2 (2010-05-16 18:20), 1.1-0 (2010-08-28 08:20), 1.1-1 (2010-09-03 21:38), 1.1-2 (2010-09-21 10:15), 1.2-0 (2010-11-22 12:10), 1.3-0 (2011-01-31 19:51), 1.3-1 (2011-02-14 20:44), 1.4-0 (2011-03-27 17:55), 1.4-1 (2011-06-30 19:03), 1.5-0 (2011-12-10 12:13), 1.5-1 (2011-12-13 09:36), 1.6-0 (2012-04-05 22:43), 1.6-3 (2012-07-01 11:28), 1.6-4 (2012-08-02 14:22), 1.6-5 (2012-10-10 12:50), 1.7-1 (2012-10-30 18:20), 1.7-4 (2013-04-04 15:43), 1.99-1 (2013-08-21 20:01), 1.99-5 (2014-01-02 19:18), 1.99-7 (2014-02-02 14:21), 1.99-8 (2014-10-07 08:55), 1.99-9 (2014-10-09 23:47), 1.99-11 (2014-11-11 09:04), 1.99-12 (2015-02-14 00:46), 1.99-13 (2015-04-08 00:44), 1.99.14 (2015-07-09 18:11), 2.0.0 (2015-12-10 23:03), 2.0.1 (2015-12-15 00:59), 2.0.2 (2016-01-23 00:39), 2.0.3 (2016-05-01 00:42), 2.0.4 (2016-06-21 08:32), 2.1.1 (2016-12-04 11:42), 2.2.0 (2017-04-03 22:40), 2.3.1 (2017-11-01 17:38), 2.4.0 (2018-02-16 00:15), 2.5.3 (2019-03-23 23:30), 2.5.5 (2019-06-19 06:40), 2.6.2 (2021-03-22 15:20), 2.6.3 (2021-04-06 14:10), 2.7.0 (2021-05-03 18:20), 2.7.1 (2021-07-13 18:00), 2.8.0 (2021-11-09 11:20), 2.8.1 (2021-12-15 01:20), 2.9.0 (2022-06-16 17:10), 2.10.0 (2022-09-18 10:26), 2.11.1 (2023-01-23 11:10)
Other packages that cited phangorn R package
View phangorn citation profile
Other R packages that phangorn depends,
imports, suggests or enhances
Complete documentation for phangorn
Functions, R codes and Examples using
the phangorn R package
Some associated functions: Ancestors . CI . Laurasiatherian . NJ . SH.test . SOWH.test . add.tips . addConfidences . add_ci . add_edge_length . allTrees . ancestral.pml . as.networx . as.phyDat . as.splits . bab . baseFreq . bootstrap.pml . chloroplast . cladePar . coalSpeciesTree . codonTest . consensusNet . cophenetic.networx . delta.score . densiTree . designTree . dfactorial . discrete.gamma . dist.hamming . dist.p . distanceHadamard . dna2codon . getClans . hadamard . identify.networx . image.phyDat . lento . mast . maxCladeCred . midpoint . mites . modelTest . neighborNet . nni . parsimony . phangorn-internal . phangorn-package . phyDat . plot.networx . plotBS . pml.control . pml.fit . pml . pmlCluster . pmlMix . pmlPart . pml_bb . read.aa . read.nexus.splits . read.phyDat . reexports . simSeq . splitsNetwork . superTree . transferBootstrap . treedist . upgma . writeDist . yeast .
Some associated R codes: Coalescent.R . Densi.R . F3X4.R . RcppExports.R . SH.R . SOWH.R . addConfidences.R . ancestral_pml.R . bab.R . baseFreq.R . bipart.R . bootstrap.R . candidate_tree.R . cladePar.R . clanistic.R . codon.R . codonTest.R . delta.score.R . discrete.gamma.R . dist.p.R . distSeq.R . distTree.R . draw_CI.R . fitch64.R . hadamard.R . hash_phylo.R . image_phyDat.R . lento.R . mast.R . maxCladeCred.R . modelTest.R . neighborNet.R . networx.R . parsimony.R . phangorn-package.R . phyDat.R . phyDat2.R . phyDat_conversion.R . phylo.R . pmlMix.R . pmlPart.R . pmlPen.R . pml_bb.R . pml_control.R . pml_generics.R . read.nexus.splits.R . read.phyDat.R . sankoff.R . simSeq.R . splits.R . splitsNetwork.R . superTree.R . transferBootstrap.R . treeManipulation.R . treeRearrangement.R . treedist.R . zzz.R . Full phangorn package functions and examples
Downloads during the last 30 days
Today's Hot Picks in Authors and Packages
assertive.numbers
Assertions to Check Properties of Numbers
A set of predicates and assertions for checking the properties of
numbers. This is mainly for use ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Richard Cotton (view profile)
disparityfilter
Disparity Filter Algorithm for Weighted Networks
The disparity filter algorithm is a network reduction technique to
identify the 'backbone' structur ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Alessandro Bessi (view profile)
nextGenShinyApps
Craft Exceptional 'R Shiny' Applications and Dashboards with Novel Responsive Tools
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Obinna Obianom (view profile)
SACOBRA
Self-Adjusting COBRA
Performs surrogate-assisted optimization for expensive black-box constrained problems. ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Samineh Bagheri (view profile)
24,205
R Packages
207,311
Dependencies
65,312
Author Associations
24,206
Publication Badges
