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pgenlibr  

PLINK 2 Binary (.pgen) Reader
View on CRAN: Click here


Download and install pgenlibr package within the R console
Install from CRAN:
install.packages("pgenlibr")

Install from Github:
library("remotes")
install_github("cran/pgenlibr")

Install by package version:
library("remotes")
install_version("pgenlibr", "0.5.4")



Attach the package and use:
library("pgenlibr")
Maintained by
Christopher Chang
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2023-05-24
Latest Update: 2025-06-25
Description:
A thin wrapper over PLINK 2's core libraries which provides an R interface for reading .pgen files. A minimal .pvar loader is also included. Chang et al. (2015) .
How to cite:
Christopher Chang (2023). pgenlibr: PLINK 2 Binary (.pgen) Reader. R package version 0.5.4, https://cran.r-project.org/web/packages/pgenlibr. Accessed 25 Aug. 2026.
Previous versions and publish date:
(2026-07-09 06:40), 0.3.3 (2023-05-24 10:20), 0.3.5 (2023-06-12 20:10), 0.3.6 (2024-05-27 20:10), 0.3.7 (2024-06-04 16:10), 0.4.0 (2025-01-16 00:30), 0.5.2 (2025-06-24 01:20), 0.5.3 (2025-06-25 14:20), 0.5.4 (2026-01-17 10:10), 0.5.5 (2026-03-11 09:10), 0.6.0 (2026-03-24 07:10), 0.6.1 (2026-03-28 18:30)
Other packages that cited pgenlibr R package
View pgenlibr citation profile
Other R packages that pgenlibr depends, imports, suggests or enhances
Complete documentation for pgenlibr
Functions, R codes and Examples using the pgenlibr R package
Some associated functions: AlleleCodeBuf . BoolBuf . Buf . ClosePgen . ClosePvar . GetAlleleCode . GetAlleleCt . GetMaxAlleleCt . GetRawSampleCt . GetVariantCt . GetVariantId . GetVariantsById . HardcallPhasePresent . IntAlleleCodeBuf . IntBuf . NewPgen . NewPvar . Read . ReadAlleles . ReadHardcalls . ReadIntList . ReadList . VariantScores . pgenlibr-package . 
Some associated R codes: RcppExports.R .  Full pgenlibr package functions and examples
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