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pergola  

Toolbox for Polyploid Genetic Data
View on CRAN: Click here


Download and install pergola package within the R console
Install from CRAN:
install.packages("pergola")

Install from Github:
library("remotes")
install_github("cran/pergola")

Install by package version:
library("remotes")
install_version("pergola", "1.0")



Attach the package and use:
library("pergola")
Maintained by
Fabian Grandke
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2016-04-03
Latest Update: 2016-04-03
Description:
Provides tools for linkage mapping in polyploids. It implements the method PERGOLA, which is a fast, deterministic method to calculate the order of markers in a linkage group.
How to cite:
Fabian Grandke (2016). pergola: Toolbox for Polyploid Genetic Data. R package version 1.0, https://cran.r-project.org/web/packages/pergola. Accessed 07 Nov. 2024.
Previous versions and publish date:
1.0 (2016-04-03 16:29)
Other packages that cited pergola R package
View pergola citation profile
Other R packages that pergola depends, imports, suggests or enhances
Functions, R codes and Examples using the pergola R package
Some associated functions: add_offset . allTrees . bases2genotypes . calcRec . calcSarf . calcSarfDist . findChr . getLeaves . getNode . getSubtree . makealtord . maketangle . map2dend . pairwRF . pergola . plotChr . plotRf . pullMap . sarfExt . shuffleInput . simHexa . simTetra . sortLeafs . splitChr . swapChrs . switchChr . switchChrs . switchEntries . 
Some associated R codes: data.R . map.R . pergola_package.R . plot.R . preprocess.R . recombination.R . sort.R . split.R . unique.R .  Full pergola package functions and examples
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