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pegas  

Population and Evolutionary Genetics Analysis System
View on CRAN: Click here


Download and install pegas package within the R console
Install from CRAN:
install.packages("pegas")

Install from Github:
library("remotes")
install_github("cran/pegas")

Install by package version:
library("remotes")
install_version("pegas", "1.3")



Attach the package and use:
library("pegas")
Maintained by
Emmanuel Paradis
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2009-05-13
Latest Update: 2023-02-23
Description:
Functions for reading, writing, plotting, analysing, and manipulating allelic and haplotypic data, including from VCF files, and for the analysis of population nucleotide sequences and micro-satellites including coalescent analyses, linkage disequilibrium, population structure (Fst, Amova) and equilibrium (HWE), haplotype networks, minimum spanning tree and network, and median-joining networks.
How to cite:
Emmanuel Paradis (2009). pegas: Population and Evolutionary Genetics Analysis System. R package version 1.3, https://cran.r-project.org/web/packages/pegas. Accessed 22 Dec. 2024.
Previous versions and publish date:
0.1 (2009-05-13 21:17), 0.2 (2009-10-07 08:38), 0.3-1 (2010-05-19 23:10), 0.3-2 (2010-06-10 08:26), 0.3-3 (2010-11-26 08:24), 0.3-4 (2011-04-01 23:07), 0.3 (2009-12-03 12:43), 0.4-1 (2012-01-19 09:00), 0.4-2 (2012-05-11 14:48), 0.4-3 (2012-07-31 18:06), 0.4-4 (2013-01-23 08:08), 0.4-5 (2013-06-06 17:04), 0.4 (2011-07-23 16:40), 0.5-1 (2014-01-10 17:58), 0.5 (2013-10-08 08:18), 0.6 (2014-08-21 10:24), 0.7 (2015-03-05 22:09), 0.8-1 (2015-06-24 15:33), 0.8-2 (2015-09-25 14:12), 0.8 (2015-05-20 00:04), 0.9 (2016-04-16 00:03), 0.10 (2017-05-03 09:05), 0.11 (2018-07-09 12:30), 0.12 (2019-10-05 06:20), 0.13 (2020-03-10 16:50), 0.14 (2020-09-16 16:10), 1.0-1 (2021-05-17 07:40), 1.0 (2021-04-08 08:50), 1.1 (2021-12-16 13:20), 1.2 (2023-02-23 13:20)
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