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pedtools  

Creating and Working with Pedigrees and Marker Data
View on CRAN: Click here


Download and install pedtools package within the R console
Install from CRAN:
install.packages("pedtools")

Install from Github:
library("remotes")
install_github("cran/pedtools")

Install by package version:
library("remotes")
install_version("pedtools", "2.6.0")



Attach the package and use:
library("pedtools")
Maintained by
Magnus Dehli Vigeland
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2019-10-11
Latest Update: 2023-08-24
Description:
A comprehensive collection of tools for creating, manipulating and visualising pedigrees and genetic marker data. Pedigrees can be read from text files or created on the fly with built-in functions. A range of utilities enable modifications like adding or removing individuals, breaking loops, and merging pedigrees. An online tool for creating pedigrees interactively, based on 'pedtools', is available at . 'pedtools' is the hub of the 'pedsuite', a collection of packages for pedigree analysis. A detailed presentation of the 'pedsuite' is given in the book 'Pedigree Analysis in R' (Vigeland, 2021, ISBN:9780128244302).
How to cite:
Magnus Dehli Vigeland (2019). pedtools: Creating and Working with Pedigrees and Marker Data. R package version 2.6.0, https://cran.r-project.org/web/packages/pedtools
Previous versions and publish date:
0.9.0 (2019-10-11 13:00), 0.9.1 (2019-12-02 11:40), 0.9.2 (2020-02-03 16:20), 0.9.3 (2020-03-21 20:00), 0.9.4 (2020-06-18 20:50), 0.9.5 (2020-08-04 16:10), 0.9.6 (2020-11-14 11:10), 0.9.7 (2021-02-10 13:40), 1.0.1 (2021-06-22 07:10), 1.1.0 (2021-12-08 12:10), 1.2.0 (2022-03-30 11:00), 1.3.0 (2022-06-07 06:30), 2.0.0 (2022-11-03 12:40), 2.1.1 (2023-01-05 22:50), 2.2.0 (2023-05-25 12:40), 2.3.1 (2023-08-24 14:30), 2.4.0 (2023-10-02 17:20), 2.5.0 (2023-11-05 11:50)
Other packages that cited pedtools R package
View pedtools citation profile
Other R packages that pedtools depends, imports, suggests or enhances
Functions, R codes and Examples using the pedtools R package
Some associated functions: addAllele . as.data.frame.ped . as.matrix.ped . as.ped . as_kinship2_pedigree . connectedComponents . distributeMarkers . famid . founderInbreeding . freqDatabase . getAlleles . getComponent . getGenotypes . getMap . getSex . inbreedingLoops . internalplot . is.marker . is.ped . locusAttributes . marker . marker_attach . marker_getattr . marker_inplace . marker_prop . marker_select . marker_setattr . maskPed . mendelianCheck . mergePed . nMarkers . newMarker . newPed . ped . ped_basic . ped_complex . ped_internal . ped_modify . ped_subgroups . ped_utils . pedtools-package . plot.ped . plotPedList . print.nucleus . print.ped . randomPed . readPed . relabel . setMutmod . setSNPs . sortGenotypes . transferMarkers . validatePed . writePed . 
Some associated R codes: getMap.R . is.ped.R . marker.R . marker_allelematrix.R . marker_attach.R . marker_database.R . marker_distribute.R . marker_genomatrix.R . marker_getattr.R . marker_locusattributes.R . marker_print.R . marker_properties.R . marker_select.R . marker_setattr.R . marker_setattr_inplace.R . marker_sort.R . marker_transfer.R . marker_utils.R . mendelianCheck.R . mergePed.R . ped.R . ped_basic.R . ped_complex.R . ped_connected.R . ped_convert.R . ped_founder-inbreeding.R . ped_internal.R . ped_labels.R . ped_loops.R . ped_mask.R . ped_methods.R . ped_modify.R . ped_plot.R . ped_sex.R . ped_subgroups.R . ped_utils.R . pedtools-package.R . plot_dag.R . plot_internal.R . randomPed.R . readPed.R . setMutmod.R . utils.R . writePed.R .  Full pedtools package functions and examples
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