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pedprobr
View on CRAN: Click
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Download and install pedprobr package within the R console
Install from CRAN:
install.packages("pedprobr")
Install from Github:
library("remotes")
install_github("cran/pedprobr")
Install by package version:
library("remotes")
install_version("pedprobr", "0.9.4")
Attach the package and use:
library("pedprobr")
Maintained by
Magnus Dehli Vigeland
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2019-11-01
Latest Update: 2023-04-13
Description:
An implementation of the Elston-Stewart algorithm for
calculating pedigree likelihoods given genetic marker data (Elston and
Stewart (1971) ). The standard algorithm is
extended to allow inbred founders. 'pedprobr' is part of the 'ped
suite', a collection of packages for pedigree analysis in R. In
particular, 'pedprobr' depends on 'pedtools' for pedigree
manipulations and 'pedmut' for mutation modelling. For more
information, see 'Pedigree Analysis in R' (Vigeland, 2021,
ISBN:9780128244302).
How to cite:
Magnus Dehli Vigeland (2019). pedprobr: Probability Computations on Pedigrees. R package version 0.9.4, https://cran.r-project.org/web/packages/pedprobr. Accessed 03 Feb. 2025.
Previous versions and publish date:
0.1.0 (2019-11-01 13:30), 0.2.0 (2020-03-21 20:00), 0.3 (2020-07-05 06:50), 0.4.0 (2020-11-13 11:30), 0.5.0 (2021-03-27 09:40), 0.6.0 (2022-01-03 14:50), 0.6.1 (2022-01-05 17:20), 0.7.0 (2022-06-07 10:50), 0.7.1 (2023-02-13 17:30), 0.8.0 (2023-04-13 17:40), 0.9.2 (2024-02-28 18:50), 0.9.3 (2024-04-02 10:40)
Other packages that cited pedprobr R package
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Other R packages that pedprobr depends,
imports, suggests or enhances
Complete documentation for pedprobr
Functions, R codes and Examples using
the pedprobr R package
Some associated functions: HWprob . allGenotypes . genoCombinations . haldane . likelihood . lumpAlleles . merlin . oneMarkerDistribution . pedprobr-package . setMutationModel . twoMarkerDistribution .
Some associated R codes: buildGenolist.R . genoCombinations.R . haldane.R . informative.R . likelihood-startdata.R . likelihood.R . likelihood2.R . merlin.R . oneMarkerDistribution.R . pedprobr-package.R . peel.R . reduceAlleles.R . setMutationModel.R . thetaCorrection.R . twoMarkerDistribution.R . utils.R . Full pedprobr package functions and examples
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