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pedmut
View on CRAN: Click
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Download and install pedmut package within the R console
Install from CRAN:
install.packages("pedmut")
Install from Github:
library("remotes")
install_github("cran/pedmut")
Install by package version:
library("remotes")
install_version("pedmut", "0.7.1")
Attach the package and use:
library("pedmut")
Maintained by
Magnus Dehli Vigeland
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2019-10-01
Latest Update: 2023-04-12
Description:
A collection of functions for modelling mutations in
pedigrees with marker data, as used e.g. in likelihood computations
with microsatellite data. Implemented models include equal,
proportional and stepwise models, as well as random models for
experimental work, and custom models allowing the user to apply any
valid mutation matrix. Allele lumping is done following the
lumpability criteria of Kemeny and Snell (1976), ISBN:0387901922.
How to cite:
Magnus Dehli Vigeland (2019). pedmut: Mutation Models for Pedigree Likelihood Computations. R package version 0.7.1, https://cran.r-project.org/web/packages/pedmut
Previous versions and publish date:
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Other R packages that pedmut depends,
imports, suggests or enhances
Functions, R codes and Examples using
the pedmut R package
Some associated functions: findStationary . getParams . isMutationModel . lumpedMatrix . maxRate . model_properties . mutRate . mutationMatrix . mutationModel . pedmut-package . stabilize . stepwiseReversible .
Some associated R codes: getParams.R . lumpedModel.R . model_properties.R . mutRate.R . mutationMatrix.R . mutationModel.R . pedmut-package.R . stabilize.R . stepwiseReversible.R . utils.R . Full pedmut package functions and examples
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