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patternize
View on CRAN: Click
here
Download and install patternize package within the R console
Install from CRAN:
install.packages("patternize")
Install from Github:
library("remotes")
install_github("cran/patternize") Install by package version:
library("remotes")
install_version("patternize", "0.0.5") Attach the package and use:
library("patternize")
Maintained by
Steven Van Belleghem
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2017-03-29
Latest Update: 2023-08-22
Description:
Quantification of variation in organismal color patterns as
obtained from image data. Patternize defines homology between pattern positions
across images either through fixed landmarks or image registration. Pattern
identification is performed by categorizing the distribution of colors using RGB
thresholds or image segmentation.
How to cite:
Steven Van Belleghem (2017). patternize: Quantification of Color Pattern Variation. R package version 0.0.5, https://cran.r-project.org/web/packages/patternize. Accessed 29 Aug. 2026.
Previous versions and publish date:
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imports, suggests or enhances
Complete documentation for patternize
Functions, R codes and Examples using
the patternize R package
Some associated functions: GMMImage . alignLan . alignReg . colorChecker . colorChecker_customGray . colorChecker_half . createPhenotype . createTarget . extdata . imageList . kImage . kImageHSV . lanArray . landmarkArray . landmarkList . makeList . maskOutline . patArea . patGMM . patK . patK_HSV . patLanHSV . patLanK . patLanK_HSV . patLanRGB . patLanW . patPCA . patRDA . patRegHSV . patRegK . patRegK_HSV . patRegRGB . patRegW . patternize . plotHeat . plotRasterstackAsImage . rasterList_lanK . rasterList_lanRGB . rasterList_regK . rasterList_regRGB . redRes . sampleLandmarks . sampleRGB . setMask . sumRaster .
Some associated R codes: GMMImage.R . alignLan.R . alignReg.R . colorChecker.R . colorChecker_customGray.R . colorChecker_half.R . createPhenotype.R . createTarget.R . data.R . extdata.R . kImage.R . kImageHSV.R . lanArray.R . makeList.R . maskOutline.R . patArea.R . patGMM.R . patK.R . patK_HSV.R . patLanHSV.R . patLanK.R . patLanK_HSV.R . patLanRGB.R . patLanW.R . patPCA.R . patRDA.R . patRegHSV.R . patRegK.R . patRegK_HSV.R . patRegRGB.R . patRegW.R . patternize.R . plotHeat.R . plotRasterStackAsImage.R . redRes.R . sampleLandmarks.R . sampleRGB.R . setMask.R . sumRaster.R . Full patternize package functions and examples
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