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pathviewr
View on CRAN: Click
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Download and install pathviewr package within the R console
Install from CRAN:
install.packages("pathviewr")
Install from Github:
library("remotes")
install_github("cran/pathviewr")
Install by package version:
library("remotes")
install_version("pathviewr", "1.1.7")
Attach the package and use:
library("pathviewr")
Maintained by
Vikram B. Baliga
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2021-05-06
Latest Update: 2023-03-08
Description:
Tools to import, clean, and visualize movement data,
particularly from motion capture systems such as Optitrack's
'Motive', the Straw Lab's 'Flydra', or from other sources. We provide
functions to remove artifacts, standardize tunnel position and tunnel
axes, select a region of interest, isolate specific trajectories, fill
gaps in trajectory data, and calculate 3D and per-axis velocity. For
experiments of visual guidance, we also provide functions that use
subject position to estimate perception of visual stimuli.
How to cite:
Vikram B. Baliga (2021). pathviewr: Wrangle, Analyze, and Visualize Animal Movement Data. R package version 1.1.7, https://cran.r-project.org/web/packages/pathviewr
Previous versions and publish date:
Other packages that cited pathviewr R package
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Other R packages that pathviewr depends,
imports, suggests or enhances
Functions, R codes and Examples using
the pathviewr R package
Some associated functions: as_viewr . bind_viewr_objects . calc_min_dist_box . calc_min_dist_v . clean_by_span . clean_viewr . clean_viewr_batch . deg_2_rad . exclude_by_velocity . fill_traj_gaps . find_curve_elbow . gather_tunnel_data . get_2d_angle . get_3d_angle . get_3d_cross_prod . get_dist_point_line . get_full_trajectories . get_header_viewr . get_sf . get_traj_velocities . get_velocity . get_vis_angle . import_and_clean_batch . import_and_clean_viewr . import_batch . insert_treatments . pathviewr-package . pipe . plot_by_subject . plot_viewr_trajectories . quick_separate_trajectories . rad_2_deg . read_flydra_mat . read_motive_csv . redefine_tunnel_center . relabel_viewr_axes . remove_duplicate_frames . remove_vel_anomalies . rename_viewr_characters . rescale_tunnel_data . rm_by_trajnum . rotate_tunnel . section_tunnel_by . select_x_percent . separate_trajectories . set_traj_frametime . standardize_tunnel . trim_tunnel_outliers . visualize_frame_gap_choice .
Some associated R codes: all_in_one_functions.R . analytical_functions.R . batch_functions.R . data_import_functions.R . globals.R . pathviewr.R . plotting_functions.R . utility_functions.R . utils-pipe.R . Full pathviewr package functions and examples
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