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palmid
View on CRAN: Click
here
Download and install palmid package within the R console
Install from CRAN:
install.packages("palmid")
Install from Github:
library("remotes")
install_github("cran/palmid") Install by package version:
library("remotes")
install_version("palmid", "0.0.3") Attach the package and use:
library("palmid")
Maintained by
Artem Babaian
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2021-10-15
Latest Update:
Description:
R Analysis suite for viral RNA dependent RNA polymerase (RdRP).
Statistical and meta-data analysis of 'palmscan' output and 'palmDB'/
'DIAMOND' alignment files. Cross reference an input RNA virus against
145,000 RdRP identified in the Serratus project.
How to cite:
Artem Babaian (2021). palmid: RdRP Analysis Suite. R package version 0.0.3, https://cran.r-project.org/web/packages/palmid. Accessed 28 Jun. 2026.
Previous versions and publish date:
0.0.3 (2021-10-15 09:50)
Other packages that cited palmid R package
View palmid citation profile
Other R packages that palmid depends,
imports, suggests or enhances
Functions, R codes and Examples using
the palmid R package
Some associated functions: PlotDistro . PlotGeo . PlotGeo2 . PlotGeoReport . PlotID . PlotLengths . PlotOrgn . PlotPP . PlotProReport . PlotReport . PlotTax . PlotTaxHist . PlotTaxReport . PlotTimeline . SerratusConnect . fev2df . geoFilter . geoFilter2 . get.palmSra . get.proTax . get.sOTU . get.sra . get.sraBio . get.sraDate . get.sraGeo . get.sraOrgn . get.tax . identityWordcount . linkBLAST . make_bg_data . normalizeWordcount . palmdb . read.fev . read.pro . standardizeWordcount . waxsys.palm.sra . waxsys.palmprint . waxsys.pro.df .
Some associated R codes: PlotDistro.R . PlotGeo.R . PlotGeo2.R . PlotGeoReport.R . PlotID.R . PlotLengths.R . PlotOrgn.R . PlotPP.R . PlotProReport.R . PlotReport.R . PlotTax.R . PlotTaxHist.R . PlotTaxReport.R . PlotTimeline.R . SerratusConnect.R . fev2df.R . geoFilter.R . geoFilter2.R . get.palmSra.R . get.proTax.R . get.sOTU.R . get.sra.R . get.sraBio.R . get.sraDate.R . get.sraGeo.R . get.sraOrgn.R . get.tax.R . identityWordcount.R . linkBLAST.R . make_bg_data.R . normalizeWordCount.R . palmdb.R . palmscan.df.R . read.fev.R . read.pro.R . standardizeWordCount.R . waxsys.palm.sra.R . waxsys.palmprint.R . waxsys.pro.df.R . Full palmid package functions and examples
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