R package citation, R package reverse dependencies, R package scholars, install an r package from GitHub hy is package acceptance pending why is package undeliverable amazon why is package on hold dhl tour packages why in r package r and r package full form why is r free why r is bad which r package to install which r package has which r package which r package version which r package readxl which r package ggplot which r package fread which r package license where is package.json where is package-lock.json where is package.swift where is package explorer in eclipse where is package where is package manager unity where is package installer android where is package manager console in visual studio who r package which r package to install which r package version who is package who is package deal who is package design r and r package full form r and r package meaning what r package has what package r what is package in java what is package what is package-lock.json what is package in python what is package.json what is package installer do r package can't install r packages r can't find package r can't load package can't load xlsx package r can't install psych package r can't install sf package r Write if else in NONMEM pk pd
paleotree
View on CRAN: Click
here
Download and install paleotree package within the R console
Install from CRAN:
install.packages("paleotree")
Install from Github:
library("remotes")
install_github("cran/paleotree")
Install by package version:
library("remotes")
install_version("paleotree", "3.4.7")
Attach the package and use:
library("paleotree")
Maintained by
David W. Bapst
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
10.32614/CRAN.package.paleotree . https://github.com/dwbapst/paleotree/issues . https://github.com/dwbapst/paleotree . paleotree citation info . paleotree results . paleotree.pdf . paleotree_3.4.7.tar.gz . paleotree_3.4.7.zip . paleotree_3.4.7.zip . paleotree_3.4.7.zip . paleotree_3.4.7.tgz . paleotree_3.4.7.tgz . paleotree_3.4.7.tgz . paleotree_3.4.7.tgz . paleotree archive . https://CRAN.R-project.org/package=paleotree .
First Published: 2012-01-27
Latest Update: 2022-08-22
Description:
Provides tools for transforming, a posteriori time-scaling, and
modifying phylogenies containing extinct (i.e. fossil) lineages. In particular,
most users are interested in the functions timePaleoPhy, bin_timePaleoPhy,
cal3TimePaleoPhy and bin_cal3TimePaleoPhy, which date cladograms of
fossil taxa using stratigraphic data. This package also contains a large number
of likelihood functions for estimating sampling and diversification rates from
different types of data available from the fossil record (e.g. range data,
occurrence data, etc). paleotree users can also simulate diversification and
sampling in the fossil record using the function simFossilRecord, which is a
detailed simulator for branching birth-death-sampling processes composed of
discrete taxonomic units arranged in ancestor-descendant relationships. Users
can use simFossilRecord to simulate diversification in incompletely sampled
fossil records, under various models of morphological differentiation (i.e.
the various patterns by which morphotaxa originate from one another), and
with time-dependent, longevity-dependent and/or diversity-dependent rates of
diversification, extinction and sampling. Additional functions allow users to
translate simulated ancestor-descendant data from simFossilRecord into standard
time-scaled phylogenies or unscaled cladograms that reflect the relationships
among taxon units.
How to cite:
David W. Bapst (2012). paleotree: Paleontological and Phylogenetic Analyses of Evolution. R package version 3.4.7, https://cran.r-project.org/web/packages/paleotree. Accessed 30 Apr. 2025.
Previous versions and publish date:
1.0 (2012-01-27 12:09), 1.1 (2012-02-13 07:43), 1.2 (2012-02-23 18:24), 1.3 (2012-04-19 07:39), 1.4 (2012-06-18 09:00), 1.5 (2012-10-06 16:11), 1.6 (2012-12-31 08:28), 1.7 (2012-12-31 19:57), 1.8.1 (2013-04-04 09:08), 1.8.2 (2013-09-04 23:17), 1.8 (2013-02-23 08:10), 1.9 (2014-01-03 07:45), 2.0 (2014-02-04 10:35), 2.1 (2014-08-16 09:55), 2.2 (2014-09-18 09:56), 2.3 (2015-01-16 18:12), 2.4 (2015-05-02 09:32), 2.5 (2015-09-21 11:19), 2.6 (2015-12-03 00:21), 2.7 (2016-04-13 21:35), 3.0.0 (2017-10-21 15:08), 3.1.0 (2018-07-03 06:10), 3.1.3 (2018-10-02 16:40), 3.3.0 (2019-06-05 00:20), 3.3.25 (2019-12-12 13:50), 3.4.4 (2022-04-25 12:10), 3.4.5 (2022-08-22 08:30)
Other packages that cited paleotree R package
View paleotree citation profile
Other R packages that paleotree depends,
imports, suggests or enhances
Complete documentation for paleotree
Functions, R codes and Examples using
the paleotree R package
Some associated functions: DiversityCurves . RaiaCopesRule . SamplingConv . SongZhangDicrano . binTimeData . branchClasses . cal3TimePaleoPhy . cladogeneticTraitCont . communityEcology . compareTimescaling . constrainParPaleo . createMrBayesConstraints . createMrBayesTipCalibrations . createMrBayesTipDatingNexus . dateNodes . dateTaxonTreePBDB . degradeTree . depthRainbow . divCurveFossilRecordSim . durationFreq . equation2function . exhaustionFunctions . expandTaxonTree . fixRootTime . footeValues . freqRat . getDataPBDB . graptDisparity . graptPBDB . horizonSampRate . inverseSurv . kanto . macroperforateForam . makePBDBtaxonTree . minBranchLength . minCharChange . modelMethods . modifyTerminalBranches . multiDiv . nearestNeighborDist . nodeDates2branchLengths . obtainDatedPosteriorTreesMrB . occData2timeList . optimPaleo . paleotree-package . parentChild2taxonTree . perCapitaRates . perfectParsCharTree . plotOccData . plotPhyloPicTree . plotTraitgram . pqr2Ps . probAnc . resolveTreeChar . retiolitinae . reverseList . rootSplit . sampleRanges . seqTimeList . setRootAge . simFossilRecord . simFossilRecordMethods . taxa2cladogram . taxa2phylo . taxonSortPBDBocc . taxonTable2taxonTree . termTaxa . testEdgeMat . timeLadderTree . timeList2fourDate . timePaleoPhy . timeSliceTree . tipDatingCompatabilitySummaryMrB . treeContradiction . twoWayEcologyCluster . unitLengthTree .
Some associated R codes: DiversityCurves.R . RaiaCopesRule.R . SamplingConv.R . SongZhangDicrano.R . binTimeData.R . branchClasses.R . cal3TimePaleoPhy.R . cladogeneticTraitCont.R . communityEcology.R . compareTimescaling.R . constrainParPaleo.R . createMrBayesConstraints.R . createMrBayesTipCalibrations.R . createMrBayesTipDatingNexus.R . dateNodes.R . dateTaxonTreePBDB.R . degradeTree.R . depthRainbow.R . divCurveFossilRecordSim.R . durationFreq.R . equation2function.R . exhaustationFunctions.R . expandTaxonTree.R . fixRootTime.R . footeValues.R . fourDateFunctions.R . freqRat.R . getDataPBDB.R . getFixedAgesFromNexus.R . graptDisparity.R . graptPBDB.R . hidden.gettingPhyloPicFunctions.R . hidden.makePBDBtaxonTree.Functions.R . hidden.modelExpressionModification.R . hidden.plotTaxonStratDurations.R . hidden.plottingPhyloPicFunctions.R . horizonSampRate.R . inverseSurv.R . isTimeListSequential.R . kanto.R . macroperforateForam.R . makePBDBtaxonTree.R . minBranchLength.R . minCharChange.R . modelMethods.R . modifyTerminalBranches.R . multiDiv.R . nearestNeighborDist.R . nodeDates2branchLengths.R . obtainDatedPosteriorTreesMrB.R . occData2timeList.R . optimPaleo.R . paleotree-package.R . parentChild2TaxonTree.R . parseNexusFile.R . perCapitaRates.R . perfectParsCharTree.R . plotOccData.R . plotPhyloPicTree.R . plotTraitgram.R . pqr2Ps.R . probAnc.R . resolveTreeChar.R . retiolitinae.R . reverseList.R . rootSplit.R . sampleRanges.R . seqTimeList.R . setRootAge.R . simFossilRecord.R . simFossilRecordInternal.R . simFossilRecordMethods.R . taxa2cladogram.R . taxa2phylo.R . taxonSortPBDBocc.R . taxonTable2TaxonTree.R . termTaxa.R . testEdgeMat.R . timeLadderTree.R . timePaleoPhy.R . timeSliceTree.R . tipDatingCompatabilitySummaryMrB.R . treeContradiction.R . twoWayEcologyCluster.R . unitLengthTree.R . writeSimpleSumtNexus.R . Full paleotree package functions and examples
Downloads during the last 30 days
Today's Hot Picks in Authors and Packages
schrute
The complete scripts from the American version of the Office
television show in tibble format. Use ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Brad Lindblad (view profile)
crimeutils
A collection of functions that make it easier to understand crime (or other)
data, and assist other ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Jacob Kaplan (view profile)
micEconAids
Functions and tools
for analysing consumer demand
with the Almost Ideal Demand System (AIDS)
sugg ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Arne Henningsen (view profile)
GRAPE
Gene-Ranking Analysis of Pathway Expression (GRAPE) is a tool for
summarizing the consensus behavio ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Michael Klein (view profile)
nextGenShinyApps
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Obinna Obianom (view profile)
eyetrackingR
Addresses tasks along the pipeline from raw
data to analysis and visualization for eye-tracking dat ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Samuel Forbes (view profile)
24,142
R Packages
207,311
Dependencies
65,176
Author Associations
24,143
Publication Badges
