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paleobuddy
View on CRAN: Click
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Download and install paleobuddy package within the R console
Install from CRAN:
install.packages("paleobuddy")
Install from Github:
library("remotes")
install_github("cran/paleobuddy")
Install by package version:
library("remotes")
install_version("paleobuddy", "1.0.0")
Attach the package and use:
library("paleobuddy")
Maintained by
Bruno do Rosario Petrucci
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2021-12-21
Latest Update: 2021-12-21
Description:
Simulation of species diversification, fossil records, and phylogenies. While the literature on species birth-death simulators is extensive, including important software like 'paleotree' and 'APE', we concluded there were interesting gaps to be filled regarding possible diversification scenarios. Here we strove for flexibility over focus, implementing a large array of regimens for users to experiment with and combine. In this way, 'paleobuddy' can be used in complement to other simulators as a flexible jack of all trades, or, in the case of scenarios implemented only here, can allow for robust and easy simulations for novel situations. Environmental data modified from that in 'RPANDA': Morlon H. et al (2016) .
How to cite:
Bruno do Rosario Petrucci (2021). paleobuddy: Simulating Diversification Dynamics. R package version 1.0.0, https://cran.r-project.org/web/packages/paleobuddy. Accessed 22 Dec. 2024.
Previous versions and publish date:
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Other R packages that paleobuddy depends,
imports, suggests or enhances
Complete documentation for paleobuddy
Functions, R codes and Examples using
the paleobuddy R package
Some associated functions: bd.sim . binner . co2 . draw.sim . find.lineages . make.phylo . make.rate . paleobuddy . phylo.to.sim . rexp.var . sample.clade . sim . temp . var.rate.div .
Some associated R codes: bd.sim.R . bd.sim.constant.R . bd.sim.general.R . binner.R . data.R . draw.sim.R . find.lineages.R . make.phylo.R . make.rate.R . paleobuddy.R . phylo.to.sim.R . rexp.var.R . sample.age.time.R . sample.clade.R . sample.time.R . sim.R . var.rate.div.R . Full paleobuddy package functions and examples
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