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pafr  

Read, Manipulate and Visualize 'Pairwise mApping Format' Data
View on CRAN: Click here


Download and install pafr package within the R console
Install from CRAN:
install.packages("pafr")

Install from Github:
library("remotes")
install_github("cran/pafr")

Install by package version:
library("remotes")
install_version("pafr", "0.0.2")



Attach the package and use:
library("pafr")
Maintained by
David Winter
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2020-12-08
Latest Update:
Description:
Provides functions to read, process and visualize pairwise sequence alignments in the 'PAF' format used by 'minimap2' and other whole-genome aligners. 'minimap2' is described by Li H. (2018) .
How to cite:
David Winter (2020). pafr: Read, Manipulate and Visualize 'Pairwise mApping Format' Data. R package version 0.0.2, https://cran.r-project.org/web/packages/pafr. Accessed 05 Aug. 2026.
Previous versions and publish date:
(2026-07-09 06:38), 0.0.2 (2020-12-08 11:20)
Other packages that cited pafr R package
View pafr citation profile
Other R packages that pafr depends, imports, suggests or enhances
Complete documentation for pafr
Functions, R codes and Examples using the pafr R package
Some associated functions: Gb_lab . as_paf . chrom_sizes . dotplot . filter_secondary_alignments . highlight_dotplot . plot_coverage . plot_synteny . read_bed . read_paf . theme_coverage_plot . 
Some associated R codes: dotplot.R .  Full pafr package functions and examples
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