Other packages > Find by keyword >

pafr  

Read, Manipulate and Visualize 'Pairwise mApping Format' Data
View on CRAN: Click here


Download and install pafr package within the R console
Install from CRAN:
install.packages("pafr")

Install from Github:
library("remotes")
install_github("cran/pafr")

Install by package version:
library("remotes")
install_version("pafr", "0.0.2")



Attach the package and use:
library("pafr")
Maintained by
David Winter
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2020-12-08
Latest Update: 2020-12-08
Description:
Provides functions to read, process and visualize pairwise sequence alignments in the 'PAF' format used by 'minimap2' and other whole-genome aligners. 'minimap2' is described by Li H. (2018) .
How to cite:
David Winter (2020). pafr: Read, Manipulate and Visualize 'Pairwise mApping Format' Data. R package version 0.0.2, https://cran.r-project.org/web/packages/pafr. Accessed 22 Dec. 2024.
Previous versions and publish date:
No previous versions
Other packages that cited pafr R package
View pafr citation profile
Other R packages that pafr depends, imports, suggests or enhances
Complete documentation for pafr
Functions, R codes and Examples using the pafr R package
Some associated functions: Gb_lab . as_paf . chrom_sizes . dotplot . filter_secondary_alignments . highlight_dotplot . plot_coverage . plot_synteny . read_bed . read_paf . theme_coverage_plot . 
Some associated R codes: dotplot.R .  Full pafr package functions and examples
Downloads during the last 30 days
Get rewarded with contribution points by helping add
Reviews / comments / questions /suggestions ↴↴↴

Today's Hot Picks in Authors and Packages

dmlalg  
Double Machine Learning Algorithms
Implementation of double machine learning (DML) algorithms in R, based on Emmenegger and Buehlmann ...
Download / Learn more Package Citations See dependency  
elect  
Estimation of Life Expectancies Using Multi-State Models
Functions to compute state-specific and marginal life expectancies. The computation is based on a fi ...
Download / Learn more Package Citations See dependency  
Rfast2  
A Collection of Efficient and Extremely Fast R Functions II
A collection of fast statistical and utility functions for data analysis. Functions for regression, ...
Download / Learn more Package Citations See dependency  
LOGANTree  
Tree-Based Models for the Analysis of Log Files from Computer-Based Assessments
Enables researchers to model log-file data from computer-based assessments using machine-learning te ...
Download / Learn more Package Citations See dependency  
Maintainer: Qi Qin (view profile)
composits  
Compositional, Multivariate and Univariate Time Series Outlier Ensemble
A compositional multivariate and univariate time series outlier ensemble.It uses the four R packages ...
Download / Learn more Package Citations See dependency  
wordspace  
Distributional Semantic Models in R
An interactive laboratory for research on distributional semantic models ('DSM', see < ...
Download / Learn more Package Citations See dependency  

23,394

R Packages

201,798

Dependencies

63,416

Author Associations

23,395

Publication Badges

© Copyright 2022 - present. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA