Other packages > Find by keyword >

pafr  

Read, Manipulate and Visualize 'Pairwise mApping Format' Data
View on CRAN: Click here


Download and install pafr package within the R console
Install from CRAN:
install.packages("pafr")

Install from Github:
library("remotes")
install_github("cran/pafr")

Install by package version:
library("remotes")
install_version("pafr", "0.0.2")



Attach the package and use:
library("pafr")
Maintained by
David Winter
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2020-12-08
Latest Update: 2020-12-08
Description:
Provides functions to read, process and visualize pairwise sequence alignments in the 'PAF' format used by 'minimap2' and other whole-genome aligners. 'minimap2' is described by Li H. (2018) .
How to cite:
David Winter (2020). pafr: Read, Manipulate and Visualize 'Pairwise mApping Format' Data. R package version 0.0.2, https://cran.r-project.org/web/packages/pafr. Accessed 07 Nov. 2024.
Previous versions and publish date:
No previous versions
Other packages that cited pafr R package
View pafr citation profile
Other R packages that pafr depends, imports, suggests or enhances
Complete documentation for pafr
Functions, R codes and Examples using the pafr R package
Some associated functions: Gb_lab . as_paf . chrom_sizes . dotplot . filter_secondary_alignments . highlight_dotplot . plot_coverage . plot_synteny . read_bed . read_paf . theme_coverage_plot . 
Some associated R codes: dotplot.R .  Full pafr package functions and examples
Downloads during the last 30 days
Get rewarded with contribution points by helping add
Reviews / comments / questions /suggestions ↴↴↴

Today's Hot Picks in Authors and Packages

bacondecomp  
Goodman-Bacon Decomposition
Decomposition for differences-in-differences with variation in treatment timing from Goodman-Bacon ...
Download / Learn more Package Citations See dependency  
nextGenShinyApps  
Craft Exceptional 'R Shiny' Applications and Dashboards with Novel Responsive Tools
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency  
con2aqi  
Calculate the AQI from Pollutant Concentration
To calculate the AQI (Air Quality Index) from pollutant concentration data. O3, PM2.5, PM10, CO, SO ...
Download / Learn more Package Citations See dependency  
robregcc  
Robust Regression with Compositional Covariates
We implement the algorithm estimating the parameters of the robust regression model with composition ...
Download / Learn more Package Citations See dependency  

23,092

R Packages

198,677

Dependencies

62,675

Author Associations

23,089

Publication Badges

© Copyright 2022 - present. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA