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otuSummary
View on CRAN: Click
here
Download and install otuSummary package within the R console
Install from CRAN:
install.packages("otuSummary")
Install from Github:
library("remotes")
install_github("cran/otuSummary") Install by package version:
library("remotes")
install_version("otuSummary", "0.1.2") Attach the package and use:
library("otuSummary")
Maintained by
Sizhong Yang
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2018-06-19
Latest Update: 2023-09-05
Description:
Summarizes the taxonomic composition, diversity contribution of the rare and abundant community by using OTU (operational taxonomic unit) table which was generated by analyzing pipeline of 'QIIME' or 'mothur'. The rare biosphere in this package is subset by the relative abundance threshold (for details about rare biosphere please see Lynch and Neufeld (2015) ).
How to cite:
Sizhong Yang (2018). otuSummary: Summarizing OTU Table Regarding the Composition, Abundance and Beta Diversity of Abundant and Rare Biospheres. R package version 0.1.2, https://cran.r-project.org/web/packages/otuSummary. Accessed 07 Aug. 2026.
Previous versions and publish date:
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View otuSummary citation profile
Other R packages that otuSummary depends,
imports, suggests or enhances
Complete documentation for otuSummary
Functions, R codes and Examples using
the otuSummary R package
Some associated functions: alphaDiversity . bplot . calc_bc . contrib . fillTax . fillTax2 . matrixConvert . otu4type . otuCollap . otuReport . otumothur . otuqiime . pbray . rareBiosphere . slimTax . subOTU . typeConvert .
Some associated R codes: MEAN.R . SUM.R . SWEEP.R . alphaDiversity.R . bplot.R . calc_bc.R . calc_chao1.R . calc_chao2.R . calc_shannon.R . calc_simpson.R . contrib.R . fillTax.R . fillTax2.R . matrixConvert.R . otuCollap.R . otuReport.R . pbray.R . rareBiosphere.R . seperation.R . slimTax.R . subOTU.R . typeConvert.R . Full otuSummary package functions and examples
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