Other packages > Find by keyword >

otuSummary  

Summarizing OTU Table Regarding the Composition, Abundance and Beta Diversity of Abundant and Rare Biospheres
View on CRAN: Click here


Download and install otuSummary package within the R console
Install from CRAN:
install.packages("otuSummary")

Install from Github:
library("remotes")
install_github("cran/otuSummary")

Install by package version:
library("remotes")
install_version("otuSummary", "0.1.2")



Attach the package and use:
library("otuSummary")
Maintained by
Sizhong Yang
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2018-06-19
Latest Update: 2023-09-05
Description:
Summarizes the taxonomic composition, diversity contribution of the rare and abundant community by using OTU (operational taxonomic unit) table which was generated by analyzing pipeline of 'QIIME' or 'mothur'. The rare biosphere in this package is subset by the relative abundance threshold (for details about rare biosphere please see Lynch and Neufeld (2015) ).
How to cite:
Sizhong Yang (2018). otuSummary: Summarizing OTU Table Regarding the Composition, Abundance and Beta Diversity of Abundant and Rare Biospheres. R package version 0.1.2, https://cran.r-project.org/web/packages/otuSummary. Accessed 07 Aug. 2026.
Previous versions and publish date:
(2026-07-09 06:38), 0.1.0 (2018-06-19 11:01), 0.1.1 (2020-03-31 22:20)
Other packages that cited otuSummary R package
View otuSummary citation profile
Other R packages that otuSummary depends, imports, suggests or enhances
Complete documentation for otuSummary
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

BayesESS  
Determining Effective Sample Size
Determines effective sample size of a parametric prior distribution in Bayesian models. For a web-b ...
Download / Learn more Package Citations See dependency  
r2resize  
In-Text Resize for Images, Tables and Fancy Resize Containers in 'shiny', 'rmarkdown' and 'quarto' Documents
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency  
enrichwith  
Methods to Enrich R Objects with Extra Components
Provides the "enrich" method to enrich list-like R objects with new, relevant components. The curren ...
Download / Learn more Package Citations See dependency  
bbricks  
Bayesian Methods and Graphical Model Structures for Statistical Modeling
A set of frequently used Bayesian parametric and nonparametric model structures, as well as a set of ...
Download / Learn more Package Citations See dependency  
modelwordcloud  
Model Word Clouds
Makes a word cloud of text, sized by the frequency of the word, and colored either by user-specified ...
Download / Learn more Package Citations See dependency  

28,083

R Packages

239,283

Dependencies

74,457

Author Associations

28,084

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA