Other packages > Find by keyword >

otuSummary  

Summarizing OTU Table Regarding the Composition, Abundance and Beta Diversity of Abundant and Rare Biospheres
View on CRAN: Click here


Download and install otuSummary package within the R console
Install from CRAN:
install.packages("otuSummary")

Install from Github:
library("remotes")
install_github("cran/otuSummary")

Install by package version:
library("remotes")
install_version("otuSummary", "0.1.2")



Attach the package and use:
library("otuSummary")
Maintained by
Sizhong Yang
[Scholar Profile | Author Map]
First Published: 2018-06-19
Latest Update: 2023-09-05
Description:
Summarizes the taxonomic composition, diversity contribution of the rare and abundant community by using OTU (operational taxonomic unit) table which was generated by analyzing pipeline of 'QIIME' or 'mothur'. The rare biosphere in this package is subset by the relative abundance threshold (for details about rare biosphere please see Lynch and Neufeld (2015) ).
How to cite:
Sizhong Yang (2018). otuSummary: Summarizing OTU Table Regarding the Composition, Abundance and Beta Diversity of Abundant and Rare Biospheres. R package version 0.1.2, https://cran.r-project.org/web/packages/otuSummary. Accessed 30 Mar. 2025.
Previous versions and publish date:
0.1.0 (2018-06-19 11:01), 0.1.1 (2020-03-31 22:20)
Other packages that cited otuSummary R package
View otuSummary citation profile
Other R packages that otuSummary depends, imports, suggests or enhances
Complete documentation for otuSummary
Downloads during the last 30 days
02/2702/2803/0103/0203/0303/0403/0503/0603/0703/0803/0903/1003/1103/1203/1303/1403/1503/1603/1703/1803/1903/2003/2103/2203/2303/2403/2503/2603/2703/28Downloads for otuSummary46810121416182022TrendBars

Today's Hot Picks in Authors and Packages

TangPoemR  
Write Chinese Tang Poems
Write Chinese Tang Poems automatically. ...
Download / Learn more Package Citations See dependency  
cocorresp  
Co-Correspondence Analysis Methods
Fits predictive and symmetric co-correspondence analysis (CoCA) models to relate one data matrix to ...
Download / Learn more Package Citations See dependency  
FAMoS  
A Flexible Algorithm for Model Selection
Given a set of parameters describing model dynamics and a corresponding cost function, FAMoS perfor ...
Download / Learn more Package Citations See dependency  
r2resize  
In-Text Resize for Images, Tables and Fancy Resize Containers in 'shiny', 'rmarkdown' and 'quarto' Documents
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency  

23,842

R Packages

207,311

Dependencies

64,420

Author Associations

23,781

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA