Other packages > Find by keyword >

optiSel  

Optimum Contribution Selection and Population Genetics
View on CRAN: Click here


Download and install optiSel package within the R console
Install from CRAN:
install.packages("optiSel")

Install from Github:
library("remotes")
install_github("cran/optiSel")

Install by package version:
library("remotes")
install_version("optiSel", "2.0.7")



Attach the package and use:
library("optiSel")
Maintained by
Robin Wellmann
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2016-06-27
Latest Update: 2023-05-08
Description:
A framework for the optimization of breeding programs via optimum contribution selection and mate allocation. An easy to use set of function for computation of optimum contributions of selection candidates, and of the population genetic parameters to be optimized. These parameters can be estimated using pedigree or genotype information, and include kinships, kinships at native haplotype segments, and breed composition of crossbred individuals. They are suitable for managing genetic diversity, removing introgressed genetic material, and accelerating genetic gain. Additionally, functions are provided for computing genetic contributions from ancestors, inbreeding coefficients, the native effective size, the native genome equivalent, pedigree completeness, and for preparing and plotting pedigrees.
How to cite:
Robin Wellmann (2016). optiSel: Optimum Contribution Selection and Population Genetics. R package version 2.0.7, https://cran.r-project.org/web/packages/optiSel
Previous versions and publish date:
0.1 (2016-06-27 17:22), 0.3 (2017-02-23 17:31), 0.5 (2017-03-23 15:56), 0.6.1 (2017-03-30 13:28), 0.6.2 (2017-03-31 12:03), 0.7.1 (2017-04-15 08:36), 0.7 (2017-04-06 15:25), 0.8.1 (2017-04-24 20:42), 0.8 (2017-04-24 14:18), 0.9.1 (2017-05-26 09:26), 0.9 (2017-05-24 12:14), 1.0.0 (2017-08-15 14:18), 2.0.1 (2018-06-28 12:35), 2.0.2 (2018-08-24 14:20), 2.0.3 (2020-03-12 12:20), 2.0.5 (2021-01-12 15:20), 2.0.6 (2023-01-27 18:10), 2.0.7 (2023-05-08 12:40), 2.0 (2017-12-15 18:24)
Other packages that cited optiSel R package
View optiSel citation profile
Other R packages that optiSel depends, imports, suggests or enhances
Functions, R codes and Examples using the optiSel R package
Some associated functions: Cattle . Chr1.phased . Chr2.phased . ExamplePed . PedigWithErrors . Phen . agecont . candes . completeness . conttac . freqlist . genecont . haplofreq . makeA . map . matings . noffspring . optiSel-package . opticomp . opticont . pedBreedComp . pedIBD . pedIBDatN . pedIBDorM . pedInbreeding . pedplot . plot.HaploFreq . prePed . read.indiv . sampleIndiv . segBreedComp . segIBD . segIBDandN . segIBDatN . segInbreeding . segN . sim2dis . subPed . summary.Pedig . summary.candes . 
Some associated R codes: NPOdata.R . NPOpopALT.R . RcppExports.R . addClasses.R . addContributions.R . agecont.R . bc4candes.R . bounds4cand.R . candes.R . characterizeBreeds.R . characterizeClasses.R . checkbc.R . checkcon.R . checkcont.R . checkphen.R . completeness.R . con2df.R . conttac.R . extractKinships.R . f4cand.R . freqlist.R . fun4Kin.R . fun4KinatN.R . genecont.R . genecontALT.R . getNe.R . getcskip.R . getskip.R . gettraits.R . haplofreq.R . lc4cand.R . makeA.R . matings.R . meankin.R . noffspring.R . onAttach.R . opticomp.R . opticont.R . pPOpop.R . param4candes.R . pedBreedComp.R . pedIBD.R . pedIBDatN.R . pedIBDorM.R . pedInbreeding.R . pedplot.R . plot.HaploFreq.R . prePed.R . printParam4candes.R . qcrc4cand.R . read.indiv.R . sampleIndiv.R . segBreedComp.R . segIBD.R . segIBDandN.R . segIBDatN.R . segInbreeding.R . segN.R . sim2dis.R . subPed.R . summary.Pedig.R . summary.candes.R . summary4opticont.R .  Full optiSel package functions and examples
Downloads during the last 30 days
Get rewarded with contribution points by helping add
Reviews / comments / questions /suggestions ↴↴↴

Today's Hot Picks in Authors and Packages

factorplot  
Graphical Presentation of Simple Contrasts
Methods to calculate, print, summarize and plot pairwise differences from GLMs, GLHT or Multinomial ...
Download / Learn more Package Citations See dependency  
bizicount  
Bivariate Zero-Inflated Count Models Using Copulas
Maximum likelihood estimation of copula-based zero-inflated (and non-inflated) Poisson and negative ...
Download / Learn more Package Citations See dependency  
srm  
Structural Equation Modeling for the Social Relations Model
Provides functionality for structural equation modeling for the social relations model (Kenny & ...
Download / Learn more Package Citations See dependency  
QuantileNPCI  
Nonparametric Confidence Intervals for Quantiles
Based on Alan D. Hutson (1999) , "Calculating nonparametric confidence i ...
Download / Learn more Package Citations See dependency  
Maintainer: Li Yan (view profile)
cdcfluview  
Retrieve Flu Season Data from the United States Centers for Disease Control and Prevention ("CDC") "FluView" Portal
The 'U.S.' Centers for Disease Control and Prevention (CDC) maintain a portal ...
Download / Learn more Package Citations See dependency  
r2resize  
In-Text Resizer for Images, Tables and Fancy Resizable Containers in 'shiny', 'rmarkdown' and 'quarto' Documents
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency  

22,114

R Packages

188,080

Dependencies

55,244

Author Associations

22,115

Publication Badges

© Copyright 2022 - present. All right reserved, rpkg.net. Contact Us / Suggestions / Concerns