Other packages > Find by keyword >

optiSel  

Optimum Contribution Selection and Population Genetics
View on CRAN: Click here


Download and install optiSel package within the R console
Install from CRAN:
install.packages("optiSel")

Install from Github:
library("remotes")
install_github("cran/optiSel")

Install by package version:
library("remotes")
install_version("optiSel", "2.0.9")



Attach the package and use:
library("optiSel")
Maintained by
Robin Wellmann
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2016-06-27
Latest Update: 2024-07-08
Description:
A framework for the optimization of breeding programs via optimum contribution selection and mate allocation. An easy to use set of function for computation of optimum contributions of selection candidates, and of the population genetic parameters to be optimized. These parameters can be estimated using pedigree or genotype information, and include kinships, kinships at native haplotype segments, and breed composition of crossbred individuals. They are suitable for managing genetic diversity, removing introgressed genetic material, and accelerating genetic gain. Additionally, functions are provided for computing genetic contributions from ancestors, inbreeding coefficients, the native effective size, the native genome equivalent, pedigree completeness, and for preparing and plotting pedigrees.
How to cite:
Robin Wellmann (2016). optiSel: Optimum Contribution Selection and Population Genetics. R package version 2.0.9, https://cran.r-project.org/web/packages/optiSel. Accessed 05 Aug. 2026.
Previous versions and publish date:
(2026-07-09 06:37), 0.1 (2016-06-27 17:22), 0.3 (2017-02-23 17:31), 0.5 (2017-03-23 15:56), 0.6.1 (2017-03-30 13:28), 0.6.2 (2017-03-31 12:03), 0.7.1 (2017-04-15 08:36), 0.7 (2017-04-06 15:25), 0.8.1 (2017-04-24 20:42), 0.8 (2017-04-24 14:18), 0.9.1 (2017-05-26 09:26), 0.9 (2017-05-24 12:14), 1.0.0 (2017-08-15 14:18), 2.0.1 (2018-06-28 12:35), 2.0.2 (2018-08-24 14:20), 2.0.3 (2020-03-12 12:20), 2.0.5 (2021-01-12 15:20), 2.0.6 (2023-01-27 18:10), 2.0.7 (2023-05-08 12:40), 2.0.8 (2024-06-12 13:00), 2.0.9 (2024-07-08 14:20), 2.0 (2017-12-15 18:24)
Other packages that cited optiSel R package
View optiSel citation profile
Other R packages that optiSel depends, imports, suggests or enhances
Complete documentation for optiSel
Functions, R codes and Examples using the optiSel R package
Some associated functions: Cattle . Chr1.phased . Chr2.phased . ExamplePed . PedigWithErrors . Phen . agecont . candes . completeness . conttac . freqlist . genecont . haplofreq . makeA . map . matings . noffspring . optiSel-package . opticomp . opticont . pedBreedComp . pedIBD . pedIBDatN . pedIBDorM . pedInbreeding . pedplot . plot.HaploFreq . prePed . read.indiv . sampleIndiv . segBreedComp . segIBD . segIBDandN . segIBDatN . segInbreeding . segN . sim2dis . subPed . summary.Pedig . summary.candes . 
Some associated R codes: NPOdata.R . NPOpopALT.R . RcppExports.R . addClasses.R . addContributions.R . agecont.R . bc4candes.R . bounds4cand.R . candes.R . characterizeBreeds.R . characterizeClasses.R . checkbc.R . checkcon.R . checkcont.R . checkphen.R . completeness.R . con2df.R . conttac.R . extractKinships.R . f4cand.R . freqlist.R . fun4Kin.R . fun4KinatN.R . genecont.R . genecontALT.R . getNe.R . getcskip.R . getskip.R . gettraits.R . haplofreq.R . lc4cand.R . makeA.R . matings.R . meankin.R . noffspring.R . onAttach.R . opticomp.R . opticont.R . pPOpop.R . param4candes.R . pedBreedComp.R . pedIBD.R . pedIBDatN.R . pedIBDorM.R . pedInbreeding.R . pedplot.R . plot.HaploFreq.R . prePed.R . printParam4candes.R . qcrc4cand.R . read.indiv.R . sampleIndiv.R . segBreedComp.R . segIBD.R . segIBDandN.R . segIBDatN.R . segInbreeding.R . segN.R . sim2dis.R . subPed.R . summary.Pedig.R . summary.candes.R . summary4opticont.R .  Full optiSel package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

dhReg  
Dynamic Harmonic Regression
Building and forecasting time series data with multiple seasonality using Dynamic Harmonic Regressio ...
Download / Learn more Package Citations See dependency  
dcov  
A Fast Implementation of Distance Covariance
Efficient methods for computing distance covariance and relevant statistics. See Sz ...
Download / Learn more Package Citations See dependency  
kernelPSI  
Post-Selection Inference for Nonlinear Variable Selection
Different post-selection inference strategies for kernelselection as described in kernelPSI a Post-S ...
Download / Learn more Package Citations See dependency  
noisyr  
Noise Quantification in High Throughput Sequencing Output
Quantifies and removes technical noise from high-throughput sequencing data. Two approaches are use ...
Download / Learn more Package Citations See dependency  
quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  

28,083

R Packages

239,283

Dependencies

74,457

Author Associations

28,084

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA