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onemap  

Construction of Genetic Maps in Experimental Crosses
View on CRAN: Click here


Download and install onemap package within the R console
Install from CRAN:
install.packages("onemap")

Install from Github:
library("remotes")
install_github("cran/onemap")

Install by package version:
library("remotes")
install_version("onemap", "3.2.1")



Attach the package and use:
library("onemap")
Maintained by
Cristiane Taniguti
[Scholar Profile | Author Map]
First Published: 2008-06-08
Latest Update: 2022-11-26
Description:
Analysis of molecular marker data from model (backcrosses, F2 and recombinant inbred lines) and non-model systems (i. e. outcrossing species). For the later, it allows statistical analysis by simultaneously estimating linkage and linkage phases (genetic map construction) according to Wu et al. (2002) . All analysis are based on multipoint approaches using hidden Markov models.
How to cite:
Cristiane Taniguti (2008). onemap: Construction of Genetic Maps in Experimental Crosses. R package version 3.2.1, https://cran.r-project.org/web/packages/onemap. Accessed 05 May. 2025.
Previous versions and publish date:
0.1-0 (2008-06-08 17:14), 0.1-1 (2008-06-10 11:22), 1.0-0 (2009-04-17 09:30), 1.0-1 (2009-04-28 20:31), 2.0-0 (2011-02-22 19:20), 2.0-1 (2012-10-29 08:59), 2.0-3 (2012-12-07 07:49), 2.0-4 (2013-09-09 20:03), 2.1.0 (2017-10-10 20:35), 2.1.1 (2017-10-19 00:48), 2.1.2 (2019-09-19 15:20), 2.1.3 (2020-02-17 07:00), 2.8.0 (2021-12-01 11:00), 2.8.1 (2021-12-10 14:00), 2.8.2 (2022-02-11 14:20), 3.0.0 (2022-11-26 06:00), 3.2.0 (2025-01-10 17:20)
Other packages that cited onemap R package
View onemap citation profile
Other R packages that onemap depends, imports, suggests or enhances
Complete documentation for onemap
Functions, R codes and Examples using the onemap R package
Some associated functions: Bonferroni_alpha . acum . add_marker . add_redundants . check_data . check_twopts . combine_onemap . compare . create_data_bins . create_dataframe_for_plot_outcross . create_depths_profile . create_probs . draw_map . draw_map2 . drop_marker . empty_onemap_obj . est_map_hmm_out . extract_depth . filter_2pts_gaps . filter_missing . filter_prob . find_bins . generate_overlapping_batches . group . group_seq . group_upgma . haldane . keep_only_selected_mks . kosambi . make_seq . map . map_avoid_unlinked . map_overlapping_batches . map_save_ram . mapmaker_example_f2 . marker_type . mds_onemap . onemap_example_bc . onemap_example_f2 . onemap_example_out . onemap_example_riself . onemap_read_vcfR . order_seq . parents_haplotypes . pick_batch_sizes . plot.group.upgma . plot.onemap . plot.onemap_progeny_haplotypes . plot.onemap_progeny_haplotypes_counts . plot.onemap_segreg_test . plot_by_segreg_type . print.compare . print.group . print.group.upgma . print.group_seq . print.onemap . print.onemap_bin . print.onemap_segreg_test . print.order . print.rf_2pts . print.sequence . print.try . progeny_haplotypes . progeny_haplotypes_counts . rcd . read_mapmaker . read_onemap . record . remove_inds . rf_2pts . rf_graph_table . rf_snp_filter_onemap . ripple_seq . rm_dupli_mks . seeded_map . select_segreg . seq_by_type . seriation . set_map_fun . sort_by_pos . split_2pts . split_onemap . suggest_lod . test_segregation . test_segregation_of_a_marker . try_seq . try_seq_by_seq . ug . vcf2raw . vcf_example_bc . vcf_example_f2 . vcf_example_out . vcf_example_riself . write_map . write_onemap_raw . 
Some associated R codes: adjust_rils.R . avoid_reverse.R . codif_data.R . comb_ger.R . combine_onemap.R . compare.R . cpp_utils.R . create_dataset_bins.R . create_depths_profile.R . create_probs.R . draw_map.R . draw_map2.R . drop_marker.R . extract_depth.R . filters.R . find_bins.R . get_info_2pt.R . group.R . group_seq.R . group_upgma.R . make_seq.R . map.R . map_func.R . marker_type.R . mds_onemap.R . onemap_read_vcfR.R . order_seq.R . overlapping_batches.R . permutations.R . phases.R . plot_raw_data.R . rcd.R . read_mapmaker.R . read_onemap.R . record.R . return_geno.R . rf_2pts.R . rf_graph_table.R . ripple_seq.R . seeded_map.R . seriation.R . suggest_lod.R . test_segregation.R . try_seq.R . ug.R . utils.R . vcf2raw.R . write_haplotypes.R . write_map.R . zzz.R .  Full onemap package functions and examples
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