Other packages > Find by keyword >

onemap  

Construction of Genetic Maps in Experimental Crosses
View on CRAN: Click here


Download and install onemap package within the R console
Install from CRAN:
install.packages("onemap")

Install from Github:
library("remotes")
install_github("cran/onemap")

Install by package version:
library("remotes")
install_version("onemap", "3.2.4")



Attach the package and use:
library("onemap")
Maintained by
Cristiane Taniguti
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2008-06-08
Latest Update: 2025-05-16
Description:
Analysis of molecular marker data from model (backcrosses, F2 and recombinant inbred lines) and non-model systems (i. e. outcrossing species). For the later, it allows statistical analysis by simultaneously estimating linkage and linkage phases (genetic map construction) according to Wu et al. (2002) . All analysis are based on multipoint approaches using hidden Markov models.
How to cite:
Cristiane Taniguti (2008). onemap: Construction of Genetic Maps in Experimental Crosses. R package version 3.2.4, https://cran.r-project.org/web/packages/onemap. Accessed 04 Jun. 2026.
Previous versions and publish date:
0.1-0 (2008-06-08 17:14), 0.1-1 (2008-06-10 11:22), 1.0-0 (2009-04-17 09:30), 1.0-1 (2009-04-28 20:31), 2.0-0 (2011-02-22 19:20), 2.0-1 (2012-10-29 08:59), 2.0-3 (2012-12-07 07:49), 2.0-4 (2013-09-09 20:03), 2.1.0 (2017-10-10 20:35), 2.1.1 (2017-10-19 00:48), 2.1.2 (2019-09-19 15:20), 2.1.3 (2020-02-17 07:00), 2.8.0 (2021-12-01 11:00), 2.8.1 (2021-12-10 14:00), 2.8.2 (2022-02-11 14:20), 3.0.0 (2022-11-26 06:00), 3.2.0 (2025-01-10 17:20), 3.2.1 (2025-04-26 01:20), 3.2.2 (2025-05-16 16:30)
Other packages that cited onemap R package
View onemap citation profile
Other R packages that onemap depends, imports, suggests or enhances
Complete documentation for onemap
Functions, R codes and Examples using the onemap R package
Some associated functions: Bonferroni_alpha . acum . add_marker . add_redundants . check_data . check_twopts . combine_onemap . compare . create_data_bins . create_dataframe_for_plot_outcross . create_depths_profile . create_probs . draw_map . draw_map2 . drop_marker . empty_onemap_obj . est_map_hmm_out . extract_depth . filter_2pts_gaps . filter_missing . filter_prob . find_bins . generate_overlapping_batches . group . group_seq . group_upgma . haldane . keep_only_selected_mks . kosambi . make_seq . map . map_avoid_unlinked . map_overlapping_batches . map_save_ram . mapmaker_example_f2 . marker_type . mds_onemap . onemap_example_bc . onemap_example_f2 . onemap_example_out . onemap_example_riself . onemap_read_vcfR . order_seq . parents_haplotypes . pick_batch_sizes . plot.group.upgma . plot.onemap . plot.onemap_progeny_haplotypes . plot.onemap_progeny_haplotypes_counts . plot.onemap_segreg_test . plot_by_segreg_type . print.compare . print.group . print.group.upgma . print.group_seq . print.onemap . print.onemap_bin . print.onemap_segreg_test . print.order . print.rf_2pts . print.sequence . print.try . progeny_haplotypes . progeny_haplotypes_counts . rcd . read_mapmaker . read_onemap . record . remove_inds . rf_2pts . rf_graph_table . rf_snp_filter_onemap . ripple_seq . rm_dupli_mks . seeded_map . select_segreg . seq_by_type . seriation . set_map_fun . sort_by_pos . split_2pts . split_onemap . suggest_lod . test_segregation . test_segregation_of_a_marker . try_seq . try_seq_by_seq . ug . vcf2raw . vcf_example_bc . vcf_example_f2 . vcf_example_out . vcf_example_riself . write_map . write_onemap_raw . 
Some associated R codes: adjust_rils.R . avoid_reverse.R . codif_data.R . comb_ger.R . combine_onemap.R . compare.R . cpp_utils.R . create_dataset_bins.R . create_depths_profile.R . create_probs.R . draw_map.R . draw_map2.R . drop_marker.R . extract_depth.R . filters.R . find_bins.R . get_info_2pt.R . group.R . group_seq.R . group_upgma.R . make_seq.R . map.R . map_func.R . marker_type.R . mds_onemap.R . onemap_read_vcfR.R . order_seq.R . overlapping_batches.R . permutations.R . phases.R . plot_raw_data.R . rcd.R . read_mapmaker.R . read_onemap.R . record.R . return_geno.R . rf_2pts.R . rf_graph_table.R . ripple_seq.R . seeded_map.R . seriation.R . suggest_lod.R . test_segregation.R . try_seq.R . ug.R . utils.R . vcf2raw.R . write_haplotypes.R . write_map.R . zzz.R .  Full onemap package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

AMPLE  
Shiny Apps to Support Capacity Building on Harvest Control Rules
Three Shiny apps are provided that introduce Harvest Control Rules (HCR) for fisheries management. ...
Download / Learn more Package Citations See dependency  
nextGenShinyApps  
Craft Exceptional 'R Shiny' Applications and Dashboards with Novel Responsive Tools
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency  
shinybusy  
Busy Indicators and Notifications for 'Shiny' Applications
Add indicators (spinner, progress bar, gif) in your 'shiny' applications to show the user that the ...
Download / Learn more Package Citations See dependency  
murphydiagram  
Murphy Diagrams for Forecast Comparisons
Data and code for the paper by Ehm, Gneiting, Jordan and Krueger ('Of Quantiles and Expectiles: Con ...
Download / Learn more Package Citations See dependency  
phers  
Calculate Phenotype Risk Scores
Use phenotype risk scores based on linked clinical and genetic data to study Mendelian disease and ...
Download / Learn more Package Citations See dependency  
crplyr  
A 'dplyr' Interface for Crunch
In order to facilitate analysis of datasets hosted on the Crunch data platform ...
Download / Learn more Package Citations See dependency  

27,268

R Packages

233,548

Dependencies

72,590

Author Associations

27,205

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA