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ofGEM  

A Meta-Analysis Approach with Filtering for Identifying Gene-Level Gene-Environment Interactions with Genetic Association Data
View on CRAN: Click here


Download and install ofGEM package within the R console
Install from CRAN:
install.packages("ofGEM")

Install from Github:
library("remotes")
install_github("cran/ofGEM")

Install by package version:
library("remotes")
install_version("ofGEM", "1.0")



Attach the package and use:
library("ofGEM")
Maintained by
Jiebiao Wang
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2018-07-13
Latest Update: 2018-07-13
Description:
Offers a gene-based meta-analysis test with filtering to detect gene-environment interactions (GxE) with association data, proposed by Wang et al. (2018) . It first conducts a meta-filtering test to filter out unpromising SNPs by combining all samples in the consortia data. It then runs a test of omnibus-filtering-based GxE meta-analysis (ofGEM) that combines the strengths of the fixed- and random-effects meta-analysis with meta-filtering. It can also analyze data from multiple ethnic groups.
How to cite:
Jiebiao Wang (2018). ofGEM: A Meta-Analysis Approach with Filtering for Identifying Gene-Level Gene-Environment Interactions with Genetic Association Data. R package version 1.0, https://cran.r-project.org/web/packages/ofGEM. Accessed 03 Dec. 2024.
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Complete documentation for ofGEM
Functions, R codes and Examples using the ofGEM R package
Some associated functions: forest_plot . ofGEM . sim_dat . 
Some associated R codes: Full ofGEM package functions and examples
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