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odin
View on CRAN: Click
here
Download and install odin package within the R console
Install from CRAN:
install.packages("odin")
Install from Github:
library("remotes")
install_github("cran/odin")
Install by package version:
library("remotes")
install_version("odin", "1.2.6")
Attach the package and use:
library("odin")
Maintained by
Rich FitzJohn
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2019-07-02
Latest Update: 2023-10-02
Description:
Generate systems of ordinary differential equations
(ODE) and integrate them, using a domain specific language
(DSL). The DSL uses R's syntax, but compiles to C in order to
efficiently solve the system. A solver is not provided, but
instead interfaces to the packages 'deSolve' and 'dde' are
generated. With these, while solving the differential equations,
no allocations are done and the calculations remain entirely in
compiled code. Alternatively, a model can be transpiled to R for
use in contexts where a C compiler is not present. After
compilation, models can be inspected to return information about
parameters and outputs, or intermediate values after calculations.
'odin' is not targeted at any particular domain and is suitable
for any system that can be expressed primarily as mathematical
expressions. Additional support is provided for working with
delays (delay differential equations, DDE), using interpolated
functions during interpolation, and for integrating quantities
that represent arrays.
How to cite:
Rich FitzJohn (2019). odin: ODE Generation and Integration. R package version 1.2.6, https://cran.r-project.org/web/packages/odin. Accessed 22 Dec. 2024.
Previous versions and publish date:
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imports, suggests or enhances
Complete documentation for odin
Functions, R codes and Examples using
the odin R package
Some associated functions: can_compile . odin . odin_build . odin_ir . odin_ir_deserialise . odin_options . odin_package . odin_parse . odin_validate .
Some associated R codes: can_compile.R . common.R . compat.R . dependencies.R . generate_c.R . generate_c_compiled.R . generate_c_equation.R . generate_c_sexp.R . generate_c_support.R . generate_c_utils.R . generate_r.R . generate_r_class.R . generate_r_equation.R . generate_r_sexp.R . generate_r_support.R . generate_r_utils.R . interface.R . ir_deserialise.R . ir_parse.R . ir_parse_arrays.R . ir_parse_config.R . ir_parse_error.R . ir_serialise.R . ir_substitute.R . ir_validate.R . misc.R . odin.R . odin_build.R . odin_options.R . odin_package.R . odin_parse.R . odin_preprocess.R . odin_validate.R . opt.R . ring_cache.R . support.R . utils.R . wrapper.R . zzz.R . Full odin package functions and examples
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