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occumb
View on CRAN: Click
here
Download and install occumb package within the R console
Install from CRAN:
install.packages("occumb")
Install from Github:
library("remotes")
install_github("cran/occumb")
Install by package version:
library("remotes")
install_version("occumb", "1.1.0")
Attach the package and use:
library("occumb")
Maintained by
Keiichi Fukaya
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
10.32614/CRAN.package.occumb . https://github.com/fukayak/occumb/issues . https://fukayak.github.io/occumb/ . https://github.com/fukayak/occumb . occumb results . occumb.pdf . Model specification in occumb() . Introduction to occumb . occumb_1.1.0.tar.gz . occumb_1.1.0.zip . occumb_1.1.0.zip . occumb_1.1.0.zip . occumb_1.1.0.tgz . occumb_1.1.0.tgz . occumb_1.1.0.tgz . occumb_1.1.0.tgz . occumb archive . https://CRAN.R-project.org/package=occumb .
First Published: 2023-09-23
Latest Update: 2024-01-08
Description:
Fits multispecies site occupancy models to environmental DNA
metabarcoding data collected using spatially-replicated survey design.
Model fitting results can be used to evaluate and compare the effectiveness
of species detection to find an efficient survey design.
Reference: Fukaya et al. (2022) .
How to cite:
Keiichi Fukaya (2023). occumb: Site Occupancy Modeling for Environmental DNA Metabarcoding. R package version 1.1.0, https://cran.r-project.org/web/packages/occumb. Accessed 11 May. 2025.
Previous versions and publish date:
Other packages that cited occumb R package
View occumb citation profile
Other R packages that occumb depends,
imports, suggests or enhances
Complete documentation for occumb
Functions, R codes and Examples using
the occumb R package
Some associated functions: eval_util_L . eval_util_R . fish . fish_raw . get_posterior . gof . list_cond_L . list_cond_R . occumb . occumbData . plot-occumbFit-method . plot-occumbGof-method . summary-occumbData-method . summary-occumbFit-method .
Some associated R codes: classes.R . fish.R . fish_raw.R . get_posterior.R . gof.R . occumb.R . occumbData.R . plot.R . show.R . summary.R . utility.R . utils.R . Full occumb package functions and examples
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