Other packages > Find by keyword >

o2geosocial  

Reconstruction of Transmission Chains from Surveillance Data
View on CRAN: Click here


Download and install o2geosocial package within the R console
Install from CRAN:
install.packages("o2geosocial")

Install from Github:
library("remotes")
install_github("cran/o2geosocial")

Install by package version:
library("remotes")
install_version("o2geosocial", "1.1.3")



Attach the package and use:
library("o2geosocial")
Maintained by
Alexis Robert
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2020-08-26
Latest Update: 2024-06-21
Description:
Bayesian reconstruction of who infected whom during past outbreaks using routinely-collected surveillance data. Inference of transmission trees using genotype, age specific social contacts, distance between cases and onset dates of the reported cases. (Robert A, Kucharski AJ, Gastanaduy PA, Paul P, Funk S. (2020) ).
How to cite:
Alexis Robert (2020). o2geosocial: Reconstruction of Transmission Chains from Surveillance Data. R package version 1.1.3, https://cran.r-project.org/web/packages/o2geosocial. Accessed 06 Aug. 2026.
Previous versions and publish date:
(2026-07-09 06:36), 1.0.0 (2020-08-26 15:50), 1.0.1 (2020-09-25 15:40), 1.1.0 (2021-09-11 06:40), 1.1.1 (2023-12-12 13:10), 1.1.2 (2024-03-26 07:40)
Other packages that cited o2geosocial R package
View o2geosocial citation profile
Other R packages that o2geosocial depends, imports, suggests or enhances
Complete documentation for o2geosocial
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

lsmeans  
Least-Squares Means
Obtain least-squares means for linear, generalized linear, and mixed models. Compute contrasts or l ...
Download / Learn more Package Citations See dependency  
TMDb  
Access to TMDb API
Provides an R-interface to the TMDb API (see TMDb API on < ...
Download / Learn more Package Citations See dependency  
SAMBA  
Selection and Misclassification Bias Adjustment for Logistic Regression Models
Health research using data from electronic health records (EHR) has gained popularity, but miscla ...
Download / Learn more Package Citations See dependency  
RRedshiftSQL  
R Interface to the 'Redshift' Database
Superclasses 'PostgreSQL' connection to help enable full 'dplyr' functionality on 'Redshift'. ...
Download / Learn more Package Citations See dependency  
r2resize  
In-Text Resize for Images, Tables and Fancy Resize Containers in 'shiny', 'rmarkdown' and 'quarto' Documents
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency  

28,083

R Packages

239,283

Dependencies

74,457

Author Associations

28,084

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA