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o2geosocial
View on CRAN: Click
here
Download and install o2geosocial package within the R console
Install from CRAN:
install.packages("o2geosocial")
Install from Github:
library("remotes")
install_github("cran/o2geosocial") Install by package version:
library("remotes")
install_version("o2geosocial", "1.1.3") Attach the package and use:
library("o2geosocial")
Maintained by
Alexis Robert
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2020-08-26
Latest Update: 2024-06-21
Description:
Bayesian reconstruction of who infected whom during past outbreaks using routinely-collected surveillance data. Inference of transmission trees using genotype, age specific social contacts, distance between cases and onset dates of the reported cases. (Robert A, Kucharski AJ, Gastanaduy PA, Paul P, Funk S. (2020) ).
How to cite:
Alexis Robert (2020). o2geosocial: Reconstruction of Transmission Chains from Surveillance Data. R package version 1.1.3, https://cran.r-project.org/web/packages/o2geosocial. Accessed 29 Oct. 2026.
Previous versions and publish date:
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imports, suggests or enhances
Complete documentation for o2geosocial
Functions, R codes and Examples using
the o2geosocial R package
Some associated functions: create_config . create_param . custom_likelihoods . custom_moves . custom_priors . outbreaker . outbreaker_chains . outbreaker_data . pre_clustering . toy_outbreak_long . toy_outbreak_short .
Some associated R codes: RcppExports.R . add_convolutions.R . bind_moves.R . create_config.R . create_param.R . custom_likelihoods.R . custom_moves.R . custom_priors.R . doc_data.R . modify_defaults.R . outbreaker.R . outbreaker_data.R . outbreaker_find_imports.R . outbreaker_init_mcmc.R . outbreaker_mcmc_shape.R . outbreaker_mcmc_store.R . outbreaker_move.R . plot_importation.R . pre_clustering.R . summary.outbreaker_chains.R . zzz.R . Full o2geosocial package functions and examples
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